Analysis of interatomic Contacts of Structural Units in PDB entry:
7U5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7U5Q entry

There are 2 chains in PDB entry 7U5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 41ALA 257
B
 THR 43ALA 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 7U5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 58Right-handed alpha
Helix 2
AA2
A
68 77Right-handed alpha
Helix 3
AA3
A
80 93Right-handed alpha
Helix 4
AA4
A
113 135Right-handed alpha
Helix 5
AA5
A
137 157Right-handed alpha
Helix 6
AA6
A
159 179Right-handed alpha
Helix 7
AA7
A
180 188Right-handed alpha
Helix 8
AA8
A
191 202Right-handed alpha
Helix 9
AA9
A
206 224Right-handed alpha
Helix 10
AB1
A
226 240Right-handed alpha
Helix 11
AB2
A
240 252Right-handed alpha
Helix 12
AB3
A
253 256Right-handed 310
Helix 13
AB4
B
44 58Right-handed alpha
Helix 14
AB5
B
68 77Right-handed alpha
Helix 15
AB6
B
80 93Right-handed alpha
Helix 16
AB7
B
113 135Right-handed alpha
Helix 17
AB8
B
137 157Right-handed alpha
Helix 18
AB9
B
159 179Right-handed alpha
Helix 19
AC1
B
180 188Right-handed alpha
Helix 20
AC2
B
191 202Right-handed alpha
Helix 21
AC3
B
206 224Right-handed alpha
Helix 22
AC4
B
226 240Right-handed alpha
Helix 23
AC5
B
240 252Right-handed alpha
Helix 24
AC6
B
253 256Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 7U5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
103 106anti-parallel
Strand 3
A
96 99anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
103 106anti-parallel
Strand 3
B
96 99anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il