Analysis of interatomic Contacts of Structural Units in PDB entry:
7U5T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U5T entry

There are 2 chains in PDB entry 7U5T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	PRO 864
B	SER 2	PRO 847

There are 66 helices in PDB entry 7U5T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	31	Right-handed alpha
Helix 2	AA2	A	44	47	Right-handed 310
Helix 3	AA3	A	48	66	Right-handed alpha
Helix 4	AA4	A	79	83	Right-handed 310
Helix 5	AA5	A	84	99	Right-handed alpha
Helix 6	AA6	A	111	125	Right-handed alpha
Helix 7	AA7	A	126	128	Right-handed 310
Helix 8	AA8	A	137	143	Right-handed alpha
Helix 9	AA9	A	175	179	Right-handed 310
Helix 10	AB1	A	181	199	Right-handed alpha
Helix 11	AB2	A	200	210	Right-handed alpha
Helix 12	AB3	A	211	219	Right-handed alpha
Helix 13	AB4	A	228	249	Right-handed alpha
Helix 14	AB5	A	256	261	Right-handed 310
Helix 15	AB6	A	265	272	Right-handed alpha
Helix 16	AB7	A	280	298	Right-handed alpha
Helix 17	AB8	A	302	315	Right-handed alpha
Helix 18	AB9	A	324	332	Right-handed alpha
Helix 19	AC1	A	333	338	Right-handed 310
Helix 20	AC2	A	339	347	Right-handed alpha
Helix 21	AC3	A	371	373	Right-handed 310
Helix 22	AC4	A	381	386	Right-handed alpha
Helix 23	AC5	A	662	671	Right-handed alpha
Helix 24	AC6	A	688	690	Right-handed 310
Helix 25	AC7	A	691	696	Right-handed alpha
Helix 26	AC8	A	735	745	Right-handed alpha
Helix 27	AC9	A	766	776	Right-handed alpha
Helix 28	AD1	A	777	779	Right-handed 310
Helix 29	AD2	A	814	825	Right-handed alpha
Helix 30	AD3	A	826	828	Right-handed 310
Helix 31	AD4	A	836	841	Right-handed 310
Helix 32	AD5	A	846	853	Right-handed alpha
Helix 33	AD6	B	20	32	Right-handed alpha
Helix 34	AD7	B	44	47	Right-handed 310
Helix 35	AD8	B	48	66	Right-handed alpha
Helix 36	AD9	B	79	83	Right-handed 310
Helix 37	AE1	B	84	95	Right-handed alpha
Helix 38	AE2	B	111	125	Right-handed alpha
Helix 39	AE3	B	126	128	Right-handed 310
Helix 40	AE4	B	137	143	Right-handed alpha
Helix 41	AE5	B	175	179	Right-handed 310
Helix 42	AE6	B	182	199	Right-handed alpha
Helix 43	AE7	B	200	210	Right-handed alpha
Helix 44	AE8	B	211	219	Right-handed alpha
Helix 45	AE9	B	228	233	Right-handed alpha
Helix 46	AF1	B	234	249	Right-handed alpha
Helix 47	AF2	B	256	261	Right-handed 310
Helix 48	AF3	B	266	272	Right-handed alpha
Helix 49	AF4	B	280	298	Right-handed alpha
Helix 50	AF5	B	302	315	Right-handed alpha
Helix 51	AF6	B	327	332	Right-handed alpha
Helix 52	AF7	B	333	338	Right-handed 310
Helix 53	AF8	B	339	347	Right-handed alpha
Helix 54	AF9	B	371	373	Right-handed 310
Helix 55	AG1	B	381	386	Right-handed alpha
Helix 56	AG2	B	644	654	Right-handed alpha
Helix 57	AG3	B	669	672	Right-handed 310
Helix 58	AG4	B	673	679	Right-handed alpha
Helix 59	AG5	B	718	724	Right-handed alpha
Helix 60	AG6	B	748	757	Right-handed alpha
Helix 61	AG7	B	758	760	Right-handed 310
Helix 62	AG8	B	785	790	Right-handed alpha
Helix 63	AG9	B	796	807	Right-handed alpha
Helix 64	AH1	B	808	810	Right-handed 310
Helix 65	AH2	B	818	823	Right-handed 310
Helix 66	AH3	B	828	835	Right-handed alpha

There are 14 sheets in PDB entry 7U5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	11	17	anti-parallel
Strand 3	A	169	173	parallel
Strand 4	A	130	135	parallel
Strand 5	A	105	110	parallel
Strand 6	A	36	42	parallel
Strand 7	A	70	76	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	162	164	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	375	376	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	368	369	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	810	first strand
Strand 2	A	832	835	parallel
Strand 3	A	390	392	anti-parallel
Strand 4	A	859	861	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	675	678	parallel
Strand 3	A	711	714	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	755	first strand
Strand 2	A	788	791	anti-parallel
Strand 3	A	782	783	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	11	17	anti-parallel
Strand 3	B	169	173	parallel
Strand 4	B	130	135	parallel
Strand 5	B	105	110	parallel
Strand 6	B	36	42	parallel
Strand 7	B	70	76	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	162	164	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	375	376	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	365	first strand
Strand 2	B	368	369	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	816	first strand
Strand 2	B	390	392	anti-parallel
Strand 3	B	841	843	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	403	first strand
Strand 2	B	657	660	parallel
Strand 3	B	693	696	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	710	first strand
Strand 2	B	734	737	parallel
Strand 3	B	771	773	anti-parallel
Strand 4	B	764	765	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U5T

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U5T