Analysis of interatomic Contacts of Structural Units in PDB entry:
7U5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U5U entry

There are 2 chains in PDB entry 7U5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 866	GLU 1559
B	SER 857	ARG 1546

There are 59 helices in PDB entry 7U5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	883	892	Right-handed alpha
Helix 2	AA2	A	924	930	Right-handed alpha
Helix 3	AA3	A	931	935	Right-handed 310
Helix 4	AA4	A	948	952	Right-handed 310
Helix 5	AA5	A	953	966	Right-handed alpha
Helix 6	AA6	A	1003	1008	Right-handed alpha
Helix 7	AA7	A	1022	1033	Right-handed alpha
Helix 8	AA8	A	1033	1041	Right-handed alpha
Helix 9	AA9	A	1069	1074	Right-handed alpha
Helix 10	AB1	A	1091	1099	Right-handed alpha
Helix 11	AB2	A	1116	1120	Right-handed 310
Helix 12	AB3	A	1128	1141	Right-handed alpha
Helix 13	AB4	A	1153	1158	Right-handed alpha
Helix 14	AB5	A	1184	1197	Right-handed alpha
Helix 15	AB6	A	1211	1216	Right-handed alpha
Helix 16	AB7	A	1238	1244	Right-handed alpha
Helix 17	AB8	A	1264	1275	Right-handed alpha
Helix 18	AB9	A	1294	1307	Right-handed alpha
Helix 19	AC1	A	1320	1325	Right-handed alpha
Helix 20	AC2	A	1340	1343	Right-handed 310
Helix 21	AC3	A	1344	1349	Right-handed 310
Helix 22	AC4	A	1354	1361	Right-handed alpha
Helix 23	AC5	A	1379	1389	Right-handed alpha
Helix 24	AC6	A	1408	1418	Right-handed alpha
Helix 25	AC7	A	1435	1440	Right-handed alpha
Helix 26	AC8	A	1454	1459	Right-handed alpha
Helix 27	AC9	A	1476	1485	Right-handed alpha
Helix 28	AD1	A	1511	1519	Right-handed alpha
Helix 29	AD2	A	1528	1545	Right-handed alpha
Helix 30	AD3	A	1549	1555	Right-handed alpha
Helix 31	AD4	B	874	880	Right-handed alpha
Helix 32	AD5	B	919	924	Right-handed alpha
Helix 33	AD6	B	943	956	Right-handed alpha
Helix 34	AD7	B	991	1002	Right-handed alpha
Helix 35	AD8	B	1013	1023	Right-handed alpha
Helix 36	AD9	B	1024	1032	Right-handed alpha
Helix 37	AE1	B	1060	1065	Right-handed alpha
Helix 38	AE2	B	1076	1078	Right-handed 310
Helix 39	AE3	B	1084	1091	Right-handed alpha
Helix 40	AE4	B	1091	1096	Right-handed alpha
Helix 41	AE5	B	1107	1111	Right-handed 310
Helix 42	AE6	B	1119	1132	Right-handed alpha
Helix 43	AE7	B	1144	1152	Right-handed alpha
Helix 44	AE8	B	1176	1188	Right-handed alpha
Helix 45	AE9	B	1202	1215	Right-handed alpha
Helix 46	AF1	B	1229	1235	Right-handed alpha
Helix 47	AF2	B	1255	1266	Right-handed alpha
Helix 48	AF3	B	1285	1297	Right-handed alpha
Helix 49	AF4	B	1312	1317	Right-handed alpha
Helix 50	AF5	B	1332	1337	Right-handed alpha
Helix 51	AF6	B	1345	1352	Right-handed alpha
Helix 52	AF7	B	1369	1380	Right-handed alpha
Helix 53	AF8	B	1400	1410	Right-handed alpha
Helix 54	AF9	B	1426	1431	Right-handed alpha
Helix 55	AG1	B	1443	1449	Right-handed alpha
Helix 56	AG2	B	1470	1478	Right-handed alpha
Helix 57	AG3	B	1502	1510	Right-handed alpha
Helix 58	AG4	B	1519	1535	Right-handed alpha
Helix 59	AG5	B	1540	1548	Right-handed alpha

There are 11 sheets in PDB entry 7U5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	872	874	first strand
Strand 2	A	970	972	parallel
Strand 3	A	1013	1015	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	894	897	first strand
Strand 2	A	941	944	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1229	1232	first strand
Strand 2	A	1201	1205	parallel
Strand 3	A	1168	1174	parallel
Strand 4	A	1145	1149	parallel
Strand 5	A	1110	1113	parallel
Strand 6	A	1079	1083	parallel
Strand 7	A	1054	1058	parallel
Strand 8	A	1249	1251	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1311	1316	first strand
Strand 2	A	1282	1287	parallel
Strand 3	A	1333	1338	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1352	1353	first strand
Strand 2	A	1372	1376	parallel
Strand 3	A	1365	1369	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1447	1449	first strand
Strand 2	A	1424	1427	parallel
Strand 3	A	1399	1403	parallel
Strand 4	A	1462	1467	parallel
Strand 5	A	1500	1503	parallel
Strand 6	A	1524	1526	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	861	864	first strand
Strand 2	B	959	964	parallel
Strand 3	B	1004	1007	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	885	886	first strand
Strand 2	B	932	933	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1220	1225	first strand
Strand 2	B	1192	1198	parallel
Strand 3	B	1159	1165	parallel
Strand 4	B	1136	1140	parallel
Strand 5	B	1101	1104	parallel
Strand 6	B	1070	1074	parallel
Strand 7	B	1045	1049	parallel
Strand 8	B	1240	1242	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1302	1307	first strand
Strand 2	B	1273	1278	parallel
Strand 3	B	1324	1329	parallel
Strand 4	B	1356	1360	anti-parallel
Strand 5	B	1363	1366	anti-parallel
Strand 6	B	1343	1344	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1438	1440	first strand
Strand 2	B	1415	1418	parallel
Strand 3	B	1390	1394	parallel
Strand 4	B	1453	1458	parallel
Strand 5	B	1491	1494	parallel
Strand 6	B	1515	1517	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U5U