Analysis of interatomic Contacts of Structural Units in PDB entry:
7U5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U5Y entry

There are 6 chains in PDB entry 7U5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -4	GLN 224
B	HIS 0	HIS 223
C	MET 1	ALA 222
D	HIS -1	HIS 223
E	HIS -1	HIS 223
F	HIS 0	ALA 222

There are 68 helices in PDB entry 7U5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	13	Right-handed 310
Helix 2	AA2	A	17	28	Right-handed alpha
Helix 3	AA3	A	49	60	Right-handed alpha
Helix 4	AA4	A	74	84	Right-handed alpha
Helix 5	AA5	A	93	96	Right-handed 310
Helix 6	AA6	A	98	109	Right-handed alpha
Helix 7	AA7	A	122	129	Right-handed 310
Helix 8	AA8	A	153	169	Right-handed alpha
Helix 9	AA9	A	184	192	Right-handed alpha
Helix 10	AB1	A	199	204	Right-handed alpha
Helix 11	AB2	A	207	221	Right-handed alpha
Helix 12	AB3	B	10	13	Right-handed 310
Helix 13	AB4	B	17	28	Right-handed alpha
Helix 14	AB5	B	49	60	Right-handed alpha
Helix 15	AB6	B	74	84	Right-handed alpha
Helix 16	AB7	B	93	96	Right-handed 310
Helix 17	AB8	B	98	109	Right-handed alpha
Helix 18	AB9	B	123	127	Right-handed 310
Helix 19	AC1	B	129	133	Right-handed 310
Helix 20	AC2	B	153	169	Right-handed alpha
Helix 21	AC3	B	181	192	Right-handed alpha
Helix 22	AC4	B	199	204	Right-handed alpha
Helix 23	AC5	B	207	221	Right-handed alpha
Helix 24	AC6	C	10	13	Right-handed 310
Helix 25	AC7	C	17	28	Right-handed alpha
Helix 26	AC8	C	49	60	Right-handed alpha
Helix 27	AC9	C	74	85	Right-handed alpha
Helix 28	AD1	C	93	96	Right-handed 310
Helix 29	AD2	C	98	109	Right-handed alpha
Helix 30	AD3	C	122	133	Right-handed 310
Helix 31	AD4	C	153	169	Right-handed alpha
Helix 32	AD5	C	184	192	Right-handed alpha
Helix 33	AD6	C	199	204	Right-handed alpha
Helix 34	AD7	C	207	221	Right-handed alpha
Helix 35	AD8	D	9	13	Right-handed 310
Helix 36	AD9	D	17	28	Right-handed alpha
Helix 37	AE1	D	49	60	Right-handed alpha
Helix 38	AE2	D	74	84	Right-handed alpha
Helix 39	AE3	D	93	96	Right-handed 310
Helix 40	AE4	D	98	109	Right-handed alpha
Helix 41	AE5	D	122	133	Right-handed 310
Helix 42	AE6	D	153	169	Right-handed alpha
Helix 43	AE7	D	181	192	Right-handed alpha
Helix 44	AE8	D	199	204	Right-handed alpha
Helix 45	AE9	D	207	221	Right-handed alpha
Helix 46	AF1	E	10	13	Right-handed 310
Helix 47	AF2	E	17	28	Right-handed alpha
Helix 48	AF3	E	49	60	Right-handed alpha
Helix 49	AF4	E	74	84	Right-handed alpha
Helix 50	AF5	E	93	96	Right-handed 310
Helix 51	AF6	E	98	109	Right-handed alpha
Helix 52	AF7	E	122	127	Right-handed 310
Helix 53	AF8	E	129	133	Right-handed 310
Helix 54	AF9	E	153	169	Right-handed alpha
Helix 55	AG1	E	181	192	Right-handed alpha
Helix 56	AG2	E	199	204	Right-handed alpha
Helix 57	AG3	E	207	221	Right-handed alpha
Helix 58	AG4	F	9	13	Right-handed 310
Helix 59	AG5	F	17	28	Right-handed alpha
Helix 60	AG6	F	49	60	Right-handed alpha
Helix 61	AG7	F	74	84	Right-handed alpha
Helix 62	AG8	F	93	96	Right-handed 310
Helix 63	AG9	F	98	109	Right-handed alpha
Helix 64	AH1	F	123	127	Right-handed 310
Helix 65	AH2	F	153	169	Right-handed alpha
Helix 66	AH3	F	184	192	Right-handed alpha
Helix 67	AH4	F	199	204	Right-handed alpha
Helix 68	AH5	F	207	221	Right-handed alpha

There are 6 sheets in PDB entry 7U5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	195	198	parallel
Strand 3	A	173	177	parallel
Strand 4	A	135	139	parallel
Strand 5	A	112	117	parallel
Strand 6	A	88	91	parallel
Strand 7	A	65	70	parallel
Strand 8	A	33	38	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	195	198	parallel
Strand 3	B	173	177	parallel
Strand 4	B	135	139	parallel
Strand 5	B	112	117	parallel
Strand 6	B	88	91	parallel
Strand 7	B	65	70	parallel
Strand 8	B	33	38	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	195	198	parallel
Strand 3	C	173	177	parallel
Strand 4	C	135	139	parallel
Strand 5	C	112	117	parallel
Strand 6	C	88	91	parallel
Strand 7	C	65	70	parallel
Strand 8	C	33	38	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	195	197	parallel
Strand 3	D	173	177	parallel
Strand 4	D	135	139	parallel
Strand 5	D	112	117	parallel
Strand 6	D	88	91	parallel
Strand 7	D	65	70	parallel
Strand 8	D	33	38	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	195	198	parallel
Strand 3	E	173	177	parallel
Strand 4	E	135	139	parallel
Strand 5	E	112	117	parallel
Strand 6	E	88	91	parallel
Strand 7	E	65	70	parallel
Strand 8	E	33	38	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	195	197	parallel
Strand 3	F	173	177	parallel
Strand 4	F	135	139	parallel
Strand 5	F	112	117	parallel
Strand 6	F	88	91	parallel
Strand 7	F	65	70	parallel
Strand 8	F	33	38	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U5Y