Analysis of interatomic Contacts of Structural Units in PDB entry:
7U6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U6D entry

There are 5 chains in PDB entry 7U6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	TRP 6
A	LYS 8	ALA 22
A	TYR 24	LEU 31
C	GLY 5	ASN 594
B	CYS 304	ALA 592

There are 19 helices in PDB entry 7U6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	15	Right-handed alpha
Helix 2	AA2	A	18	30	Right-handed alpha
Helix 3	AA3	C	16	21	Right-handed alpha
Helix 4	AA4	C	42	48	Right-handed alpha
Helix 5	AA5	C	139	143	Right-handed 310
Helix 6	AA6	C	193	197	Right-handed 310
Helix 7	AA7	C	255	264	Right-handed alpha
Helix 8	AA8	C	323	329	Right-handed alpha
Helix 9	AA9	C	350	359	Right-handed alpha
Helix 10	AB1	C	435	446	Right-handed alpha
Helix 11	AB2	C	448	452	Right-handed 310
Helix 12	AB3	C	496	498	Right-handed 310
Helix 13	AB4	B	323	329	Right-handed alpha
Helix 14	AB5	B	350	359	Right-handed alpha
Helix 15	AB6	B	435	446	Right-handed alpha
Helix 16	AB7	B	448	452	Right-handed 310
Helix 17	AB8	B	496	498	Right-handed 310
Helix 18	AB9	B	517	522	Right-handed alpha
Helix 19	AC1	B	542	546	Right-handed 310

There are 16 sheets in PDB entry 7U6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	28	29	parallel
Strand 3	C	56	57	parallel
Strand 4	C	81	82	parallel
Strand 5	C	111	112	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	33	38	parallel
Strand 3	C	61	66	parallel
Strand 4	C	93	96	parallel
Strand 5	C	117	120	parallel
Strand 6	C	144	145	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	179	180	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	248	first strand
Strand 2	C	252	254	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	279	first strand
Strand 2	C	284	285	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	301	302	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	321	first strand
Strand 2	C	335	342	parallel
Strand 3	C	363	364	parallel
Strand 4	C	387	388	parallel
Strand 5	C	420	421	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	321	first strand
Strand 2	C	335	342	parallel
Strand 3	C	368	371	parallel
Strand 4	C	398	403	parallel
Strand 5	C	425	429	parallel
Strand 6	C	456	457	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	473	first strand
Strand 2	C	581	583	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	480	first strand
Strand 2	C	485	488	anti-parallel
Strand 3	C	550	553	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	534	first strand
Strand 2	C	500	509	anti-parallel
Strand 3	C	561	570	anti-parallel
Strand 4	C	586	589	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	321	first strand
Strand 2	B	335	342	parallel
Strand 3	B	363	364	parallel
Strand 4	B	387	388	parallel
Strand 5	B	420	421	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	321	first strand
Strand 2	B	335	342	parallel
Strand 3	B	368	371	parallel
Strand 4	B	398	403	parallel
Strand 5	B	425	429	parallel
Strand 6	B	456	457	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	473	first strand
Strand 2	B	581	583	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	485	489	anti-parallel
Strand 3	B	550	553	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	534	first strand
Strand 2	B	500	509	anti-parallel
Strand 3	B	562	570	anti-parallel
Strand 4	B	586	588	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U6D