Analysis of interatomic Contacts of Structural Units in PDB entry:
7U6I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7U6I entry

There are 2 chains in PDB entry 7U6I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5PHE 250
B
 SER 5LYS 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7U6I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
25 40Right-handed alpha
Helix 3
AA3
A
49 68Right-handed alpha
Helix 4
AA4
A
76 79Right-handed 310
Helix 5
AA5
A
89 97Right-handed alpha
Helix 6
AA6
A
98 105Right-handed alpha
Helix 7
AA7
A
106 118Right-handed alpha
Helix 8
AA8
A
126 129Right-handed 310
Helix 9
AA9
A
162 166Right-handed 310
Helix 10
AB1
A
183 191Right-handed alpha
Helix 11
AB2
A
233 238Right-handed alpha
Helix 12
AB3
A
243 250Right-handed alpha
Helix 13
AB4
B
10 23Right-handed alpha
Helix 14
AB5
B
25 40Right-handed alpha
Helix 15
AB6
B
49 78Right-handed alpha
Helix 16
AB7
B
89 97Right-handed alpha
Helix 17
AB8
B
98 105Right-handed alpha
Helix 18
AB9
B
106 118Right-handed alpha
Helix 19
AC1
B
126 129Right-handed 310
Helix 20
AC2
B
162 166Right-handed 310
Helix 21
AC3
B
183 191Right-handed alpha
Helix 22
AC4
B
234 239Right-handed 310
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There are 5 sheets in PDB entry 7U6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
203 207anti-parallel
Strand 3
A
152 159anti-parallel
Strand 4
A
224 231anti-parallel
Strand 5
A
131 136anti-parallel
Strand 6
A
82 88anti-parallel
Strand 7
A
69 74anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
203 207anti-parallel
Strand 3
A
152 159anti-parallel
Strand 4
A
224 231anti-parallel
Strand 5
A
131 136anti-parallel
Strand 6
A
82 88anti-parallel
Strand 7
A
142 143anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
169 172anti-parallel
Strand 3
A
212 215anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
203 206anti-parallel
Strand 3
B
152 159anti-parallel
Strand 4
B
224 231anti-parallel
Strand 5
B
131 136anti-parallel
Strand 6
B
87 88anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
169 172anti-parallel
Strand 3
B
212 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il