Analysis of interatomic Contacts of Structural Units in PDB entry:
7U6J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U6J entry

There are 8 chains in PDB entry 7U6J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	ASP 251
B	ASN 4	ASP 251
C	SER 5	ASP 251
D	SER 5	ASP 251
E	SER 5	ASP 251
F	SER 5	ASP 251
G	ASN 4	ASP 251
H	SER 5	ASP 251

There are 96 helices in PDB entry 7U6J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	25	40	Right-handed alpha
Helix 3	AA3	A	49	68	Right-handed alpha
Helix 4	AA4	A	76	79	Right-handed 310
Helix 5	AA5	A	89	97	Right-handed alpha
Helix 6	AA6	A	98	105	Right-handed alpha
Helix 7	AA7	A	106	118	Right-handed alpha
Helix 8	AA8	A	126	129	Right-handed 310
Helix 9	AA9	A	162	166	Right-handed 310
Helix 10	AB1	A	183	191	Right-handed alpha
Helix 11	AB2	A	233	239	Right-handed alpha
Helix 12	AB3	A	243	250	Right-handed alpha
Helix 13	AB4	B	10	23	Right-handed alpha
Helix 14	AB5	B	25	40	Right-handed alpha
Helix 15	AB6	B	49	68	Right-handed alpha
Helix 16	AB7	B	76	79	Right-handed 310
Helix 17	AB8	B	89	97	Right-handed alpha
Helix 18	AB9	B	98	105	Right-handed alpha
Helix 19	AC1	B	106	118	Right-handed alpha
Helix 20	AC2	B	126	129	Right-handed 310
Helix 21	AC3	B	162	166	Right-handed 310
Helix 22	AC4	B	183	191	Right-handed alpha
Helix 23	AC5	B	233	239	Right-handed alpha
Helix 24	AC6	B	243	250	Right-handed alpha
Helix 25	AC7	C	10	23	Right-handed alpha
Helix 26	AC8	C	25	40	Right-handed alpha
Helix 27	AC9	C	49	68	Right-handed alpha
Helix 28	AD1	C	76	79	Right-handed 310
Helix 29	AD2	C	89	97	Right-handed alpha
Helix 30	AD3	C	98	105	Right-handed alpha
Helix 31	AD4	C	106	118	Right-handed alpha
Helix 32	AD5	C	126	129	Right-handed 310
Helix 33	AD6	C	162	166	Right-handed 310
Helix 34	AD7	C	183	191	Right-handed alpha
Helix 35	AD8	C	234	238	Right-handed 310
Helix 36	AD9	C	243	250	Right-handed alpha
Helix 37	AE1	D	10	23	Right-handed alpha
Helix 38	AE2	D	25	40	Right-handed alpha
Helix 39	AE3	D	49	68	Right-handed alpha
Helix 40	AE4	D	76	79	Right-handed 310
Helix 41	AE5	D	89	97	Right-handed alpha
Helix 42	AE6	D	98	105	Right-handed alpha
Helix 43	AE7	D	106	118	Right-handed alpha
Helix 44	AE8	D	126	129	Right-handed 310
Helix 45	AE9	D	162	166	Right-handed 310
Helix 46	AF1	D	183	191	Right-handed alpha
Helix 47	AF2	D	233	239	Right-handed alpha
Helix 48	AF3	D	243	250	Right-handed alpha
Helix 49	AF4	E	10	23	Right-handed alpha
Helix 50	AF5	E	25	40	Right-handed alpha
Helix 51	AF6	E	49	68	Right-handed alpha
Helix 52	AF7	E	76	79	Right-handed 310
Helix 53	AF8	E	89	97	Right-handed alpha
Helix 54	AF9	E	98	105	Right-handed alpha
Helix 55	AG1	E	106	118	Right-handed alpha
Helix 56	AG2	E	126	129	Right-handed 310
Helix 57	AG3	E	162	166	Right-handed 310
Helix 58	AG4	E	183	191	Right-handed alpha
Helix 59	AG5	E	233	239	Right-handed alpha
Helix 60	AG6	E	243	250	Right-handed alpha
Helix 61	AG7	F	10	23	Right-handed alpha
Helix 62	AG8	F	25	40	Right-handed alpha
Helix 63	AG9	F	49	68	Right-handed alpha
Helix 64	AH1	F	76	79	Right-handed 310
Helix 65	AH2	F	89	97	Right-handed alpha
Helix 66	AH3	F	98	105	Right-handed alpha
Helix 67	AH4	F	106	118	Right-handed alpha
Helix 68	AH5	F	126	129	Right-handed 310
Helix 69	AH6	F	162	166	Right-handed 310
Helix 70	AH7	F	183	191	Right-handed alpha
Helix 71	AH8	F	233	239	Right-handed alpha
Helix 72	AH9	F	243	250	Right-handed alpha
Helix 73	AI1	G	10	23	Right-handed alpha
Helix 74	AI2	G	25	40	Right-handed alpha
Helix 75	AI3	G	49	68	Right-handed alpha
Helix 76	AI4	G	76	79	Right-handed 310
Helix 77	AI5	G	89	97	Right-handed alpha
Helix 78	AI6	G	98	105	Right-handed alpha
Helix 79	AI7	G	106	118	Right-handed alpha
Helix 80	AI8	G	126	129	Right-handed 310
Helix 81	AI9	G	162	166	Right-handed 310
Helix 82	AJ1	G	183	191	Right-handed alpha
Helix 83	AJ2	G	234	238	Right-handed 310
Helix 84	AJ3	G	243	250	Right-handed alpha
Helix 85	AJ4	H	10	23	Right-handed alpha
Helix 86	AJ5	H	25	40	Right-handed alpha
Helix 87	AJ6	H	49	68	Right-handed alpha
Helix 88	AJ7	H	76	79	Right-handed 310
Helix 89	AJ8	H	89	97	Right-handed alpha
Helix 90	AJ9	H	98	105	Right-handed alpha
Helix 91	AK1	H	106	118	Right-handed alpha
Helix 92	AK2	H	126	129	Right-handed 310
Helix 93	AK3	H	162	166	Right-handed 310
Helix 94	AK4	H	183	191	Right-handed alpha
Helix 95	AK5	H	233	239	Right-handed alpha
Helix 96	AK6	H	243	250	Right-handed alpha

There are 24 sheets in PDB entry 7U6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	203	207	anti-parallel
Strand 3	A	152	159	anti-parallel
Strand 4	A	224	231	anti-parallel
Strand 5	A	131	136	anti-parallel
Strand 6	A	82	88	anti-parallel
Strand 7	A	69	74	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	203	207	anti-parallel
Strand 3	A	152	159	anti-parallel
Strand 4	A	224	231	anti-parallel
Strand 5	A	131	136	anti-parallel
Strand 6	A	82	88	anti-parallel
Strand 7	A	142	143	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	169	172	anti-parallel
Strand 3	A	212	215	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	203	207	anti-parallel
Strand 3	B	152	159	anti-parallel
Strand 4	B	224	231	anti-parallel
Strand 5	B	131	136	anti-parallel
Strand 6	B	82	88	anti-parallel
Strand 7	B	69	74	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	203	207	anti-parallel
Strand 3	B	152	159	anti-parallel
Strand 4	B	224	231	anti-parallel
Strand 5	B	131	136	anti-parallel
Strand 6	B	82	88	anti-parallel
Strand 7	B	142	143	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	169	172	anti-parallel
Strand 3	B	212	215	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	203	207	anti-parallel
Strand 3	C	152	159	anti-parallel
Strand 4	C	224	231	anti-parallel
Strand 5	C	131	136	anti-parallel
Strand 6	C	82	88	anti-parallel
Strand 7	C	69	74	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	203	207	anti-parallel
Strand 3	C	152	159	anti-parallel
Strand 4	C	224	231	anti-parallel
Strand 5	C	131	136	anti-parallel
Strand 6	C	82	88	anti-parallel
Strand 7	C	142	143	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	169	172	anti-parallel
Strand 3	C	212	215	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	203	207	anti-parallel
Strand 3	D	152	159	anti-parallel
Strand 4	D	224	231	anti-parallel
Strand 5	D	131	136	anti-parallel
Strand 6	D	82	88	anti-parallel
Strand 7	D	69	74	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	203	207	anti-parallel
Strand 3	D	152	159	anti-parallel
Strand 4	D	224	231	anti-parallel
Strand 5	D	131	136	anti-parallel
Strand 6	D	82	88	anti-parallel
Strand 7	D	142	143	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	196	first strand
Strand 2	D	169	172	anti-parallel
Strand 3	D	212	215	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	E	203	207	anti-parallel
Strand 3	E	152	159	anti-parallel
Strand 4	E	224	231	anti-parallel
Strand 5	E	131	136	anti-parallel
Strand 6	E	82	88	anti-parallel
Strand 7	E	69	74	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	E	203	207	anti-parallel
Strand 3	E	152	159	anti-parallel
Strand 4	E	224	231	anti-parallel
Strand 5	E	131	136	anti-parallel
Strand 6	E	82	88	anti-parallel
Strand 7	E	142	143	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	196	first strand
Strand 2	E	169	172	anti-parallel
Strand 3	E	212	215	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	43	first strand
Strand 2	F	203	207	anti-parallel
Strand 3	F	152	159	anti-parallel
Strand 4	F	224	231	anti-parallel
Strand 5	F	131	136	anti-parallel
Strand 6	F	82	88	anti-parallel
Strand 7	F	69	74	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	43	first strand
Strand 2	F	203	207	anti-parallel
Strand 3	F	152	159	anti-parallel
Strand 4	F	224	231	anti-parallel
Strand 5	F	131	136	anti-parallel
Strand 6	F	82	88	anti-parallel
Strand 7	F	142	143	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	194	196	first strand
Strand 2	F	169	172	anti-parallel
Strand 3	F	212	215	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	43	first strand
Strand 2	G	203	207	anti-parallel
Strand 3	G	152	159	anti-parallel
Strand 4	G	224	231	anti-parallel
Strand 5	G	131	136	anti-parallel
Strand 6	G	82	88	anti-parallel
Strand 7	G	69	74	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	43	first strand
Strand 2	G	203	207	anti-parallel
Strand 3	G	152	159	anti-parallel
Strand 4	G	224	231	anti-parallel
Strand 5	G	131	136	anti-parallel
Strand 6	G	82	88	anti-parallel
Strand 7	G	142	143	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	196	first strand
Strand 2	G	169	172	anti-parallel
Strand 3	G	212	215	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	43	first strand
Strand 2	H	203	207	anti-parallel
Strand 3	H	152	159	anti-parallel
Strand 4	H	224	231	anti-parallel
Strand 5	H	131	136	anti-parallel
Strand 6	H	82	88	anti-parallel
Strand 7	H	69	74	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	43	first strand
Strand 2	H	203	207	anti-parallel
Strand 3	H	152	159	anti-parallel
Strand 4	H	224	231	anti-parallel
Strand 5	H	131	136	anti-parallel
Strand 6	H	82	88	anti-parallel
Strand 7	H	142	143	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	194	196	first strand
Strand 2	H	169	172	anti-parallel
Strand 3	H	212	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U6J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U6J