Analysis of interatomic Contacts of Structural Units in PDB entry:
7U6Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U6Y entry

There are 5 chains in PDB entry 7U6Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 33	SER 354
B	ALA 33	ARG 353
C	ARG 31	ARG 353
D	ALA 33	ARG 353
E	MET 1	VAL 1578

There are 80 helices in PDB entry 7U6Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	65	Right-handed alpha
Helix 2	AA2	A	67	97	Right-handed alpha
Helix 3	AA3	A	116	129	Right-handed alpha
Helix 4	AA4	A	142	174	Right-handed alpha
Helix 5	AA5	A	175	177	Right-handed 310
Helix 6	AA6	A	265	270	Right-handed 310
Helix 7	AA7	A	272	276	Right-handed 310
Helix 8	AA8	A	331	333	Right-handed 310
Helix 9	AA9	A	345	354	Right-handed alpha
Helix 10	AB1	B	56	65	Right-handed alpha
Helix 11	AB2	B	67	97	Right-handed alpha
Helix 12	AB3	B	116	129	Right-handed alpha
Helix 13	AB4	B	142	177	Right-handed alpha
Helix 14	AB5	B	265	270	Right-handed 310
Helix 15	AB6	B	345	353	Right-handed alpha
Helix 16	AB7	C	56	65	Right-handed alpha
Helix 17	AB8	C	67	98	Right-handed alpha
Helix 18	AB9	C	116	129	Right-handed alpha
Helix 19	AC1	C	142	176	Right-handed alpha
Helix 20	AC2	C	265	270	Right-handed 310
Helix 21	AC3	C	271	275	Right-handed 310
Helix 22	AC4	C	305	307	Right-handed 310
Helix 23	AC5	C	345	353	Right-handed alpha
Helix 24	AC6	D	55	65	Right-handed alpha
Helix 25	AC7	D	67	97	Right-handed alpha
Helix 26	AC8	D	116	129	Right-handed alpha
Helix 27	AC9	D	142	176	Right-handed alpha
Helix 28	AD1	D	265	270	Right-handed 310
Helix 29	AD2	D	331	333	Right-handed 310
Helix 30	AD3	D	346	351	Right-handed alpha
Helix 31	AD4	E	8	16	Right-handed 310
Helix 32	AD5	E	24	51	Right-handed alpha
Helix 33	AD6	E	60	65	Right-handed 310
Helix 34	AD7	E	70	96	Right-handed alpha
Helix 35	AD8	E	103	106	Right-handed 310
Helix 36	AD9	E	107	130	Right-handed alpha
Helix 37	AE1	E	132	136	Right-handed 310
Helix 38	AE2	E	137	160	Right-handed alpha
Helix 39	AE3	E	166	194	Right-handed alpha
Helix 40	AE4	E	207	212	Right-handed alpha
Helix 41	AE5	E	223	230	Right-handed alpha
Helix 42	AE6	E	232	241	Right-handed alpha
Helix 43	AE7	E	258	276	Right-handed alpha
Helix 44	AE8	E	283	329	Right-handed alpha
Helix 45	AE9	E	347	352	Right-handed alpha
Helix 46	AF1	E	354	402	Right-handed alpha
Helix 47	AF2	E	405	411	Right-handed alpha
Helix 48	AF3	E	413	457	Right-handed alpha
Helix 49	AF4	E	457	505	Right-handed alpha
Helix 50	AF5	E	505	512	Right-handed alpha
Helix 51	AF6	E	514	564	Right-handed alpha
Helix 52	AF7	E	572	615	Right-handed alpha
Helix 53	AF8	E	719	728	Right-handed alpha
Helix 54	AF9	E	783	790	Right-handed alpha
Helix 55	AG1	E	795	807	Right-handed alpha
Helix 56	AG2	E	808	815	Right-handed alpha
Helix 57	AG3	E	831	847	Right-handed alpha
Helix 58	AG4	E	864	881	Right-handed alpha
Helix 59	AG5	E	913	921	Right-handed alpha
Helix 60	AG6	E	923	928	Right-handed alpha
Helix 61	AG7	E	988	993	Right-handed alpha
Helix 62	AG8	E	996	1009	Right-handed alpha
Helix 63	AG9	E	1010	1040	Right-handed alpha
Helix 64	AH1	E	1064	1106	Right-handed alpha
Helix 65	AH2	E	1109	1116	Right-handed alpha
Helix 66	AH3	E	1117	1161	Right-handed alpha
Helix 67	AH4	E	1162	1210	Right-handed alpha
Helix 68	AH5	E	1210	1217	Right-handed alpha
Helix 69	AH6	E	1219	1274	Right-handed alpha
Helix 70	AH7	E	1277	1320	Right-handed alpha
Helix 71	AH8	E	1386	1392	Right-handed alpha
Helix 72	AH9	E	1414	1421	Right-handed alpha
Helix 73	AI1	E	1435	1441	Right-handed alpha
Helix 74	AI2	E	1448	1459	Right-handed alpha
Helix 75	AI3	E	1460	1466	Right-handed alpha
Helix 76	AI4	E	1476	1480	Right-handed 310
Helix 77	AI5	E	1485	1499	Right-handed alpha
Helix 78	AI6	E	1512	1530	Right-handed alpha
Helix 79	AI7	E	1539	1545	Right-handed alpha
Helix 80	AI8	E	1572	1578	Right-handed alpha

There are 31 sheets in PDB entry 7U6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	201	204	anti-parallel
Strand 3	A	255	256	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	195	199	anti-parallel
Strand 3	A	187	192	anti-parallel
Strand 4	A	309	311	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	238	first strand
Strand 2	A	210	221	anti-parallel
Strand 3	A	282	291	anti-parallel
Strand 4	A	297	298	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	210	221	anti-parallel
Strand 3	A	282	291	anti-parallel
Strand 4	A	301	304	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	315	first strand
Strand 2	A	336	338	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	326	329	anti-parallel
Strand 3	D	45	47	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	C	326	329	parallel
Strand 3	C	320	321	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	195	204	anti-parallel
Strand 3	B	255	260	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	195	204	anti-parallel
Strand 3	B	187	192	anti-parallel
Strand 4	B	309	311	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	B	210	221	anti-parallel
Strand 3	B	282	291	anti-parallel
Strand 4	B	297	298	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	B	210	221	anti-parallel
Strand 3	B	282	291	anti-parallel
Strand 4	B	301	305	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	315	first strand
Strand 2	B	336	338	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	320	first strand
Strand 2	B	327	328	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	47	first strand
Strand 2	D	326	329	parallel
Strand 3	D	319	321	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	197	204	anti-parallel
Strand 3	C	255	260	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	197	204	anti-parallel
Strand 3	C	187	189	anti-parallel
Strand 4	C	309	311	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	238	first strand
Strand 2	C	210	224	anti-parallel
Strand 3	C	248	249	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	238	first strand
Strand 2	C	210	224	anti-parallel
Strand 3	C	282	291	anti-parallel
Strand 4	C	301	304	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	315	first strand
Strand 2	C	336	338	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	201	204	anti-parallel
Strand 3	D	255	256	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	199	first strand
Strand 2	D	188	192	anti-parallel
Strand 3	D	310	311	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	290	291	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	238	first strand
Strand 2	D	215	221	anti-parallel
Strand 3	D	282	287	anti-parallel
Strand 4	D	301	305	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	315	first strand
Strand 2	D	336	338	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	678	681	first strand
Strand 2	E	737	740	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	685	687	first strand
Strand 2	E	731	734	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	709	712	first strand
Strand 2	E	899	903	parallel
Strand 3	E	908	910	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	770	771	first strand
Strand 2	E	850	854	parallel
Strand 3	E	883	887	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1345	1347	first strand
Strand 2	E	1403	1405	anti-parallel
Strand 3	E	1408	1409	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1502	1507	first strand
Strand 2	E	1532	1537	parallel
Strand 3	E	1374	1377	parallel
Strand 4	E	1548	1549	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1552	1553	first strand
Strand 2	E	1556	1557	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U6Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U6Y