Analysis of interatomic Contacts of Structural Units in PDB entry:
7U7H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U7H entry

There are 4 chains in PDB entry 7U7H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	ARG 423
B	MSE 1	ARG 423
C	MSE 1	PRO 411
D	MSE 1	GLU 97

There are105 helices in PDB entry 7U7H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	10	Right-handed alpha
Helix 2	AA2	A	12	24	Right-handed alpha
Helix 3	AA3	A	61	76	Right-handed alpha
Helix 4	AA4	A	90	105	Right-handed alpha
Helix 5	AA5	A	114	127	Right-handed alpha
Helix 6	AA6	A	140	149	Right-handed alpha
Helix 7	AA7	A	161	180	Right-handed alpha
Helix 8	AA8	A	199	206	Right-handed alpha
Helix 9	AA9	A	206	211	Right-handed alpha
Helix 10	AB1	A	226	230	Right-handed 310
Helix 11	AB2	A	231	237	Right-handed alpha
Helix 12	AB3	A	263	274	Right-handed alpha
Helix 13	AB4	A	274	279	Right-handed alpha
Helix 14	AB5	A	284	301	Right-handed alpha
Helix 15	AB6	A	302	322	Right-handed alpha
Helix 16	AB7	A	341	355	Right-handed alpha
Helix 17	AB8	A	384	404	Right-handed alpha
Helix 18	AB9	A	406	410	Right-handed 310
Helix 19	AC1	B	3	10	Right-handed alpha
Helix 20	AC2	B	12	24	Right-handed alpha
Helix 21	AC3	B	61	76	Right-handed alpha
Helix 22	AC4	B	90	105	Right-handed alpha
Helix 23	AC5	B	114	127	Right-handed alpha
Helix 24	AC6	B	140	149	Right-handed alpha
Helix 25	AC7	B	161	180	Right-handed alpha
Helix 26	AC8	B	199	206	Right-handed alpha
Helix 27	AC9	B	207	209	Right-handed 310
Helix 28	AD1	B	226	230	Right-handed 310
Helix 29	AD2	B	231	237	Right-handed alpha
Helix 30	AD3	B	263	274	Right-handed alpha
Helix 31	AD4	B	274	279	Right-handed alpha
Helix 32	AD5	B	284	301	Right-handed alpha
Helix 33	AD6	B	302	322	Right-handed alpha
Helix 34	AD7	B	341	355	Right-handed alpha
Helix 35	AD8	B	384	405	Right-handed alpha
Helix 36	AD9	B	405	410	Right-handed alpha
Helix 37	AE1	C	3	10	Right-handed alpha
Helix 38	AE2	C	14	21	Right-handed alpha
Helix 39	AE3	C	61	76	Right-handed alpha
Helix 40	AE4	C	90	105	Right-handed alpha
Helix 41	AE5	C	114	127	Right-handed alpha
Helix 42	AE6	C	140	148	Right-handed alpha
Helix 43	AE7	C	161	180	Right-handed alpha
Helix 44	AE8	C	199	206	Right-handed alpha
Helix 45	AE9	C	207	209	Right-handed 310
Helix 46	AF1	C	226	230	Right-handed 310
Helix 47	AF2	C	231	237	Right-handed alpha
Helix 48	AF3	C	263	274	Right-handed alpha
Helix 49	AF4	C	274	279	Right-handed alpha
Helix 50	AF5	C	284	301	Right-handed alpha
Helix 51	AF6	C	302	322	Right-handed alpha
Helix 52	AF7	C	341	355	Right-handed alpha
Helix 53	AF8	C	384	404	Right-handed alpha
Helix 54	AF9	C	405	410	Right-handed alpha
Helix 55	AG1	D	3	10	Right-handed alpha
Helix 56	AG2	D	14	21	Right-handed alpha
Helix 57	AG3	D	61	76	Right-handed alpha
Helix 58	AG4	D	90	105	Right-handed alpha
Helix 59	AG5	D	114	127	Right-handed alpha
Helix 60	AG6	D	140	148	Right-handed alpha
Helix 61	AG7	D	161	180	Right-handed alpha
Helix 62	AG8	D	199	207	Right-handed alpha
Helix 63	AG9	D	226	230	Right-handed 310
Helix 64	AH1	D	231	237	Right-handed alpha
Helix 65	AH2	D	263	274	Right-handed alpha
Helix 66	AH3	D	274	279	Right-handed alpha
Helix 67	AH4	D	284	301	Right-handed alpha
Helix 68	AH5	D	302	322	Right-handed alpha
Helix 69	AH6	D	341	357	Right-handed alpha
Helix 70	AH7	D	384	404	Right-handed alpha
Helix 71	AH8	E	3	10	Right-handed alpha
Helix 72	AH9	E	12	24	Right-handed alpha
Helix 73	AI1	E	61	75	Right-handed alpha
Helix 74	AI2	E	90	105	Right-handed alpha
Helix 75	AI3	E	114	127	Right-handed alpha
Helix 76	AI4	E	140	150	Right-handed alpha
Helix 77	AI5	E	161	180	Right-handed alpha
Helix 78	AI6	E	199	206	Right-handed alpha
Helix 79	AI7	E	207	209	Right-handed 310
Helix 80	AI8	E	226	230	Right-handed 310
Helix 81	AI9	E	231	236	Right-handed alpha
Helix 82	AJ1	E	263	272	Right-handed alpha
Helix 83	AJ2	E	274	279	Right-handed alpha
Helix 84	AJ3	E	284	301	Right-handed alpha
Helix 85	AJ4	E	302	322	Right-handed alpha
Helix 86	AJ5	E	341	355	Right-handed alpha
Helix 87	AJ6	E	384	404	Right-handed alpha
Helix 88	AJ7	E	405	410	Right-handed alpha
Helix 89	AJ8	F	3	10	Right-handed alpha
Helix 90	AJ9	F	14	24	Right-handed alpha
Helix 91	AK1	F	61	75	Right-handed alpha
Helix 92	AK2	F	90	105	Right-handed alpha
Helix 93	AK3	F	114	127	Right-handed alpha
Helix 94	AK4	F	140	150	Right-handed alpha
Helix 95	AK5	F	161	180	Right-handed alpha
Helix 96	AK6	F	199	207	Right-handed alpha
Helix 97	AK7	F	226	230	Right-handed 310
Helix 98	AK8	F	231	237	Right-handed alpha
Helix 99	AK9	F	263	272	Right-handed alpha
Helix 100	AL1	F	274	279	Right-handed alpha
Helix 101	AL2	F	284	301	Right-handed alpha
Helix 102	AL3	F	302	322	Right-handed alpha
Helix 103	AL4	F	341	355	Right-handed alpha
Helix 104	AL5	F	384	404	Right-handed alpha
Helix 105	AL6	F	405	410	Right-handed alpha

There are 18 sheets in PDB entry 7U7H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	42	first strand
Strand 2	A	45	49	anti-parallel
Strand 3	A	358	359	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	258	262	anti-parallel
Strand 3	A	244	248	anti-parallel
Strand 4	A	213	217	parallel
Strand 5	A	183	188	parallel
Strand 6	A	132	136	parallel
Strand 7	A	153	157	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	326	first strand
Strand 2	A	334	340	anti-parallel
Strand 3	A	371	377	anti-parallel
Strand 4	A	361	363	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	45	49	anti-parallel
Strand 3	B	358	359	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	112	first strand
Strand 2	B	258	262	anti-parallel
Strand 3	B	244	248	anti-parallel
Strand 4	B	213	217	parallel
Strand 5	B	183	188	parallel
Strand 6	B	132	136	parallel
Strand 7	B	153	157	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	340	first strand
Strand 2	B	371	377	anti-parallel
Strand 3	B	361	363	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	358	359	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	258	262	anti-parallel
Strand 3	C	244	248	anti-parallel
Strand 4	C	212	217	parallel
Strand 5	C	183	188	parallel
Strand 6	C	132	136	parallel
Strand 7	C	153	157	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	326	first strand
Strand 2	C	334	339	anti-parallel
Strand 3	C	372	377	anti-parallel
Strand 4	C	361	363	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	47	49	anti-parallel
Strand 3	D	358	359	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	112	first strand
Strand 2	D	258	262	anti-parallel
Strand 3	D	244	248	anti-parallel
Strand 4	D	213	217	parallel
Strand 5	D	183	188	parallel
Strand 6	D	132	136	parallel
Strand 7	D	153	157	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	326	first strand
Strand 2	D	334	339	anti-parallel
Strand 3	D	372	377	anti-parallel
Strand 4	D	361	363	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	42	first strand
Strand 2	E	45	49	anti-parallel
Strand 3	E	358	359	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	112	first strand
Strand 2	E	258	262	anti-parallel
Strand 3	E	244	248	anti-parallel
Strand 4	E	213	217	parallel
Strand 5	E	183	188	parallel
Strand 6	E	132	136	parallel
Strand 7	E	153	157	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	326	first strand
Strand 2	E	334	340	anti-parallel
Strand 3	E	371	377	anti-parallel
Strand 4	E	361	363	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	33	first strand
Strand 2	F	39	42	anti-parallel
Strand 3	F	45	49	anti-parallel
Strand 4	F	358	359	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	112	first strand
Strand 2	F	258	262	anti-parallel
Strand 3	F	244	248	anti-parallel
Strand 4	F	213	217	parallel
Strand 5	F	183	188	parallel
Strand 6	F	132	136	parallel
Strand 7	F	153	157	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	334	339	first strand
Strand 2	F	372	377	anti-parallel
Strand 3	F	361	363	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U7H

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U7H