Analysis of interatomic Contacts of Structural Units in PDB entry:
7U8F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U8F entry

There are 4 chains in PDB entry 7U8F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 69	LEU 442
B	MET 1	HIS 1140
C	SER 136	SER 163
D	GLY 69	VAL 110

There are 49 helices in PDB entry 7U8F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	116	Right-handed alpha
Helix 2	AA2	A	192	198	Right-handed 310
Helix 3	AA3	A	214	219	Right-handed alpha
Helix 4	AA4	A	220	232	Right-handed alpha
Helix 5	AA5	A	233	238	Right-handed 310
Helix 6	AA6	A	241	247	Right-handed alpha
Helix 7	AA7	A	249	265	Right-handed alpha
Helix 8	AA8	A	268	273	Right-handed alpha
Helix 9	AA9	A	276	288	Right-handed alpha
Helix 10	AB1	A	291	301	Right-handed alpha
Helix 11	AB2	A	303	318	Right-handed alpha
Helix 12	AB3	A	335	337	Right-handed 310
Helix 13	AB4	B	381	384	Right-handed 310
Helix 14	AB5	B	728	730	Right-handed 310
Helix 15	AB6	B	769	774	Right-handed alpha
Helix 16	AB7	B	985	990	Right-handed alpha
Helix 17	AB8	B	1044	1062	Right-handed alpha
Helix 18	AB9	B	1064	1068	Right-handed 310
Helix 19	AC1	B	1069	1075	Right-handed alpha
Helix 20	AC2	B	1091	1096	Right-handed alpha
Helix 21	AC3	B	1097	1100	Right-handed 310
Helix 22	AC4	B	1101	1110	Right-handed alpha
Helix 23	AC5	B	1125	1138	Right-handed alpha
Helix 24	AC6	C	151	163	Right-handed alpha
Helix 25	AC7	D	103	116	Right-handed alpha
Helix 26	AC8	D	192	198	Right-handed 310
Helix 27	AC9	D	214	220	Right-handed alpha
Helix 28	AD1	D	220	232	Right-handed alpha
Helix 29	AD2	D	233	238	Right-handed 310
Helix 30	AD3	D	241	247	Right-handed alpha
Helix 31	AD4	D	249	265	Right-handed alpha
Helix 32	AD5	D	268	273	Right-handed alpha
Helix 33	AD6	D	276	288	Right-handed alpha
Helix 34	AD7	D	291	301	Right-handed alpha
Helix 35	AD8	D	303	318	Right-handed alpha
Helix 36	AD9	D	335	337	Right-handed 310
Helix 37	AE1	E	250	255	Right-handed alpha
Helix 38	AE2	E	381	384	Right-handed 310
Helix 39	AE3	E	728	730	Right-handed 310
Helix 40	AE4	E	769	774	Right-handed alpha
Helix 41	AE5	E	985	990	Right-handed alpha
Helix 42	AE6	E	1044	1062	Right-handed alpha
Helix 43	AE7	E	1064	1068	Right-handed 310
Helix 44	AE8	E	1069	1075	Right-handed alpha
Helix 45	AE9	E	1091	1096	Right-handed alpha
Helix 46	AF1	E	1097	1100	Right-handed 310
Helix 47	AF2	E	1101	1110	Right-handed alpha
Helix 48	AF3	E	1125	1138	Right-handed alpha
Helix 49	AF4	F	151	162	Right-handed alpha

There are 43 sheets in PDB entry 7U8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	101	first strand
Strand 2	A	152	169	anti-parallel
Strand 3	A	178	185	anti-parallel
Strand 4	A	78	83	anti-parallel
Strand 5	A	119	127	parallel
Strand 6	A	132	149	anti-parallel
Strand 7	A	152	169	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	333	first strand
Strand 2	A	320	323	anti-parallel
Strand 3	A	422	425	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	350	first strand
Strand 2	A	356	362	anti-parallel
Strand 3	A	413	418	anti-parallel
Strand 4	A	397	404	anti-parallel
Strand 5	A	384	391	anti-parallel
Strand 6	A	368	375	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1004	1009	first strand
Strand 2	B	1025	1032	anti-parallel
Strand 3	B	1037	1042	anti-parallel
Strand 4	B	4	10	anti-parallel
Strand 5	B	1088	1090	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	49	56	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	67	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	85	94	anti-parallel
Strand 4	B	97	107	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	130	134	anti-parallel
Strand 3	B	139	144	anti-parallel
Strand 4	B	155	158	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	201	204	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	237	241	anti-parallel
Strand 4	B	244	248	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	263	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	279	285	anti-parallel
Strand 4	B	300	307	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	318	first strand
Strand 2	B	321	326	anti-parallel
Strand 3	B	331	336	anti-parallel
Strand 4	B	347	353	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	392	anti-parallel
Strand 4	B	710	716	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	743	anti-parallel
Strand 3	B	749	751	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	743	anti-parallel
Strand 3	B	785	795	anti-parallel
Strand 4	B	801	806	anti-parallel
Strand 5	B	762	765	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	820	first strand
Strand 2	B	827	835	anti-parallel
Strand 3	B	846	854	anti-parallel
Strand 4	B	857	866	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	874	876	first strand
Strand 2	B	879	884	anti-parallel
Strand 3	B	887	893	anti-parallel
Strand 4	B	899	903	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	917	first strand
Strand 2	B	920	924	anti-parallel
Strand 3	B	929	936	anti-parallel
Strand 4	B	941	949	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	959	first strand
Strand 2	B	964	969	anti-parallel
Strand 3	B	973	979	anti-parallel
Strand 4	B	992	999	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1077	first strand
Strand 2	B	1082	1083	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	148	149	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	101	first strand
Strand 2	D	152	169	anti-parallel
Strand 3	D	178	185	anti-parallel
Strand 4	D	78	83	anti-parallel
Strand 5	D	119	127	parallel
Strand 6	D	132	149	anti-parallel
Strand 7	D	152	169	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	333	first strand
Strand 2	D	320	323	anti-parallel
Strand 3	D	422	425	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	356	362	anti-parallel
Strand 3	D	413	418	anti-parallel
Strand 4	D	397	404	anti-parallel
Strand 5	D	384	391	anti-parallel
Strand 6	D	368	375	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1004	1009	first strand
Strand 2	E	1025	1032	anti-parallel
Strand 3	E	1037	1042	anti-parallel
Strand 4	E	4	10	anti-parallel
Strand 5	E	1088	1090	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	21	first strand
Strand 2	E	30	35	anti-parallel
Strand 3	E	38	44	anti-parallel
Strand 4	E	49	56	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	67	first strand
Strand 2	E	76	81	anti-parallel
Strand 3	E	85	94	anti-parallel
Strand 4	E	97	107	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	124	first strand
Strand 2	E	130	134	anti-parallel
Strand 3	E	139	144	anti-parallel
Strand 4	E	155	158	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	169	first strand
Strand 2	E	177	184	anti-parallel
Strand 3	E	187	196	anti-parallel
Strand 4	E	201	204	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	169	first strand
Strand 2	E	177	184	anti-parallel
Strand 3	E	187	196	anti-parallel
Strand 4	E	210	211	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	221	first strand
Strand 2	E	229	232	anti-parallel
Strand 3	E	237	241	anti-parallel
Strand 4	E	244	248	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	263	first strand
Strand 2	E	270	275	anti-parallel
Strand 3	E	279	285	anti-parallel
Strand 4	E	300	307	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	318	first strand
Strand 2	E	321	326	anti-parallel
Strand 3	E	331	336	anti-parallel
Strand 4	E	347	353	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	365	first strand
Strand 2	E	374	379	anti-parallel
Strand 3	E	386	392	anti-parallel
Strand 4	E	710	716	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	720	727	first strand
Strand 2	E	732	743	anti-parallel
Strand 3	E	749	751	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	720	727	first strand
Strand 2	E	732	743	anti-parallel
Strand 3	E	785	795	anti-parallel
Strand 4	E	801	806	anti-parallel
Strand 5	E	762	765	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	811	819	first strand
Strand 2	E	828	835	anti-parallel
Strand 3	E	846	854	anti-parallel
Strand 4	E	857	866	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	874	876	first strand
Strand 2	E	879	884	anti-parallel
Strand 3	E	887	893	anti-parallel
Strand 4	E	899	903	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	913	917	first strand
Strand 2	E	920	924	anti-parallel
Strand 3	E	929	936	anti-parallel
Strand 4	E	941	949	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	954	959	first strand
Strand 2	E	964	969	anti-parallel
Strand 3	E	973	979	anti-parallel
Strand 4	E	992	999	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1076	1077	first strand
Strand 2	E	1082	1083	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1113	1115	first strand
Strand 2	E	1121	1123	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	141	first strand
Strand 2	F	148	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U8F

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U8F