Analysis of interatomic Contacts of Structural Units in PDB entry:
7U8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7U8G entry

There are 4 chains in PDB entry 7U8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7ARG 287
B
 ILE 4GLU 135
D
 SER 2SER 120
E
 ALA 1LYS 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7U8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 35Right-handed alpha
Helix 2
AA2
A
36 38Right-handed 310
Helix 3
AA3
A
39 47Right-handed alpha
Helix 4
AA4
A
48 68Right-handed alpha
Helix 5
AA5
A
97 131Right-handed alpha
Helix 6
AA6
A
135 143Right-handed alpha
Helix 7
AA7
A
163 173Right-handed alpha
Helix 8
AA8
A
173 193Right-handed alpha
Helix 9
AA9
A
194 201Right-handed alpha
Helix 10
AB1
A
201 210Right-handed alpha
Helix 11
AB2
A
211 221Right-handed alpha
Helix 12
AB3
A
234 239Right-handed alpha
Helix 13
AB4
A
240 245Right-handed alpha
Helix 14
AB5
A
247 251Right-handed 310
Helix 15
AB6
A
268 287Right-handed alpha
Helix 16
AB7
B
5 31Right-handed alpha
Helix 17
AB8
B
35 54Right-handed alpha
Helix 18
AB9
B
69 79Right-handed alpha
Helix 19
AC1
B
81 86Right-handed alpha
Helix 20
AC2
B
86 102Right-handed alpha
Helix 21
AC3
B
104 127Right-handed alpha
Helix 22
AC4
D
62 65Right-handed 310
Helix 23
AC5
D
86 90Right-handed 310
Helix 24
AC6
E
79 83Right-handed 310
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There are 6 sheets in PDB entry 7U8G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 231first strand
Strand 2
A
262 264anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
17 23anti-parallel
Strand 3
D
77 82anti-parallel
Strand 4
D
68 71anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
45 51anti-parallel
Strand 3
D
35 39anti-parallel
Strand 4
D
91 100anti-parallel
Strand 5
D
106 111anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
45 51anti-parallel
Strand 3
D
35 39anti-parallel
Strand 4
D
91 100anti-parallel
Strand 5
D
115 117anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 6first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
70 75anti-parallel
Strand 4
E
62 67anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 13first strand
Strand 2
E
105 109parallel
Strand 3
E
85 90anti-parallel
Strand 4
E
33 38anti-parallel
Strand 5
E
45 48anti-parallel
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