Analysis of interatomic Contacts of Structural Units in PDB entry:
7U8T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7U8T entry

There are 2 chains in PDB entry 7U8T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	PHE 593
B	PRO 21	TYR 702

There are 8 helices in PDB entry 7U8T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	185	190	Right-handed alpha
Helix 2	AA2	A	198	201	Right-handed 310
Helix 3	AA3	A	210	215	Right-handed alpha
Helix 4	AA4	A	246	251	Right-handed 310
Helix 5	AA5	A	475	479	Right-handed 310
Helix 6	AA6	B	197	201	Right-handed 310
Helix 7	AA7	B	210	217	Right-handed alpha
Helix 8	AA8	B	475	479	Right-handed 310

There are 22 sheets in PDB entry 7U8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	B	634	638	parallel
Strand 3	B	593	597	anti-parallel
Strand 4	B	694	701	parallel
Strand 5	B	681	691	anti-parallel
Strand 6	B	672	675	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	22	26	anti-parallel
Strand 3	A	138	143	parallel
Strand 4	A	124	132	anti-parallel
Strand 5	A	109	115	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	58	first strand
Strand 2	A	31	36	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	100	104	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	146	150	anti-parallel
Strand 3	A	255	260	parallel
Strand 4	A	233	241	anti-parallel
Strand 5	A	219	225	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	174	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	191	196	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	298	first strand
Strand 2	A	263	267	anti-parallel
Strand 3	A	366	371	parallel
Strand 4	A	349	358	anti-parallel
Strand 5	A	339	343	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	290	first strand
Strand 2	A	273	279	anti-parallel
Strand 3	A	307	313	anti-parallel
Strand 4	A	324	327	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	419	first strand
Strand 2	A	374	378	anti-parallel
Strand 3	A	482	488	parallel
Strand 4	A	463	473	anti-parallel
Strand 5	A	450	457	anti-parallel
Strand 6	B	450	457	anti-parallel
Strand 7	B	463	473	anti-parallel
Strand 8	B	482	488	anti-parallel
Strand 9	B	374	378	parallel
Strand 10	B	417	419	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	463	473	anti-parallel
Strand 3	A	450	457	anti-parallel
Strand 4	B	450	457	anti-parallel
Strand 5	B	463	473	anti-parallel
Strand 6	B	523	525	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	384	389	anti-parallel
Strand 3	A	429	434	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	490	495	anti-parallel
Strand 3	A	579	586	parallel
Strand 4	A	569	576	anti-parallel
Strand 5	A	553	557	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	513	first strand
Strand 2	A	500	503	anti-parallel
Strand 3	A	531	535	anti-parallel
Strand 4	A	547	548	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	66	first strand
Strand 2	B	22	26	anti-parallel
Strand 3	B	138	143	parallel
Strand 4	B	127	132	anti-parallel
Strand 5	B	109	112	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	31	34	anti-parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	100	104	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	181	first strand
Strand 2	B	146	150	anti-parallel
Strand 3	B	255	260	parallel
Strand 4	B	233	241	anti-parallel
Strand 5	B	219	225	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	174	first strand
Strand 2	B	156	162	anti-parallel
Strand 3	B	191	195	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	298	first strand
Strand 2	B	263	267	anti-parallel
Strand 3	B	366	371	parallel
Strand 4	B	349	358	anti-parallel
Strand 5	B	339	343	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	290	first strand
Strand 2	B	273	279	anti-parallel
Strand 3	B	307	313	anti-parallel
Strand 4	B	324	327	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	389	first strand
Strand 2	B	429	434	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	520	first strand
Strand 2	B	490	495	anti-parallel
Strand 3	B	580	586	parallel
Strand 4	B	566	575	anti-parallel
Strand 5	B	553	560	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	513	first strand
Strand 2	B	500	503	anti-parallel
Strand 3	B	531	535	anti-parallel
Strand 4	B	547	548	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	630	first strand
Strand 2	B	603	607	anti-parallel
Strand 3	B	650	654	anti-parallel
Strand 4	B	657	661	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7U8T

Analysis of interatomic Contacts of Structural Units in PDB entry:
7U8T