Analysis of interatomic Contacts of Structural Units in PDB entry:
7U9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7U9W entry

There are 2 chains in PDB entry 7U9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 562ASN 732
H
 GLU 1LYS 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 7U9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
663 667Right-handed alpha
Helix 2
AA2
A
682 685Right-handed 310
Helix 3
AA3
H
28 32Right-handed 310
Helix 4
AA4
H
87 91Right-handed 310
Helix 5
AA5
H
221 225Right-handed 310
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There are 11 sheets in PDB entry 7U9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 566first strand
Strand 2
A
657 662anti-parallel
Strand 3
A
649 654anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 583first strand
Strand 2
A
608 615parallel
Strand 3
A
720 727parallel
Strand 4
A
700 707anti-parallel
Strand 5
A
640 642anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 594first strand
Strand 2
A
621 625parallel
Strand 3
A
687 691anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
675 676first strand
Strand 2
A
679 680anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 713first strand
Strand 2
A
716 717anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
116 120parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
116 120parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
109 112anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
146 149first strand
Strand 2
H
161 167anti-parallel
Strand 3
H
212 217anti-parallel
Strand 4
H
204 209anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
152 156first strand
Strand 2
H
244 249parallel
Strand 3
H
226 232anti-parallel
Strand 4
H
175 180anti-parallel
Strand 5
H
187 191anti-parallel
Strand 6
H
195 196anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
152 156first strand
Strand 2
H
244 249parallel
Strand 3
H
226 232anti-parallel
Strand 4
H
239 240anti-parallel
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