Analysis of interatomic Contacts of Structural Units in PDB entry:
7UAB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UAB entry

There are 4 chains in PDB entry 7UAB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 40	SER 600
D	GLN 40	SER 600
E	PHE 37	SER 600
H	PHE 37	SER 600

There are 60 helices in PDB entry 7UAB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	50	Right-handed alpha
Helix 2	AA2	A	54	58	Right-handed 310
Helix 3	AA3	A	88	106	Right-handed alpha
Helix 4	AA4	A	149	163	Right-handed alpha
Helix 5	AA5	A	179	183	Right-handed 310
Helix 6	AA6	A	186	192	Right-handed 310
Helix 7	AA7	A	246	252	Right-handed alpha
Helix 8	AA8	A	440	448	Right-handed alpha
Helix 9	AA9	A	546	551	Right-handed alpha
Helix 10	AB1	A	573	579	Right-handed alpha
Helix 11	AB2	A	582	586	Right-handed 310
Helix 12	AB3	A	597	600	Right-handed 310
Helix 13	AB4	D	42	50	Right-handed alpha
Helix 14	AB5	D	54	58	Right-handed 310
Helix 15	AB6	D	88	106	Right-handed alpha
Helix 16	AB7	D	149	162	Right-handed alpha
Helix 17	AB8	D	179	183	Right-handed 310
Helix 18	AB9	D	187	192	Right-handed 310
Helix 19	AC1	D	246	253	Right-handed alpha
Helix 20	AC2	D	440	448	Right-handed alpha
Helix 21	AC3	D	516	520	Right-handed 310
Helix 22	AC4	D	546	551	Right-handed alpha
Helix 23	AC5	D	555	558	Right-handed 310
Helix 24	AC6	D	573	579	Right-handed alpha
Helix 25	AC7	D	582	586	Right-handed 310
Helix 26	AC8	D	597	600	Right-handed 310
Helix 27	AC9	E	42	50	Right-handed alpha
Helix 28	AD1	E	54	58	Right-handed 310
Helix 29	AD2	E	88	106	Right-handed alpha
Helix 30	AD3	E	149	162	Right-handed alpha
Helix 31	AD4	E	165	169	Right-handed 310
Helix 32	AD5	E	171	174	Right-handed 310
Helix 33	AD6	E	180	183	Right-handed 310
Helix 34	AD7	E	187	192	Right-handed 310
Helix 35	AD8	E	232	238	Right-handed 310
Helix 36	AD9	E	246	258	Right-handed alpha
Helix 37	AE1	E	275	279	Right-handed 310
Helix 38	AE2	E	411	415	Right-handed 310
Helix 39	AE3	E	440	448	Right-handed alpha
Helix 40	AE4	E	516	520	Right-handed 310
Helix 41	AE5	E	546	551	Right-handed alpha
Helix 42	AE6	E	573	579	Right-handed alpha
Helix 43	AE7	E	580	586	Right-handed 310
Helix 44	AE8	E	597	600	Right-handed 310
Helix 45	AE9	H	42	50	Right-handed alpha
Helix 46	AF1	H	88	106	Right-handed alpha
Helix 47	AF2	H	149	162	Right-handed alpha
Helix 48	AF3	H	165	170	Right-handed 310
Helix 49	AF4	H	171	175	Right-handed alpha
Helix 50	AF5	H	180	183	Right-handed 310
Helix 51	AF6	H	186	192	Right-handed 310
Helix 52	AF7	H	232	238	Right-handed 310
Helix 53	AF8	H	246	258	Right-handed alpha
Helix 54	AF9	H	275	279	Right-handed 310
Helix 55	AG1	H	411	415	Right-handed 310
Helix 56	AG2	H	440	448	Right-handed alpha
Helix 57	AG3	H	546	551	Right-handed alpha
Helix 58	AG4	H	573	578	Right-handed alpha
Helix 59	AG5	H	582	586	Right-handed 310
Helix 60	AG6	H	597	600	Right-handed 310

There are 35 sheets in PDB entry 7UAB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	112	first strand
Strand 2	A	79	83	parallel
Strand 3	A	120	123	parallel
Strand 4	A	139	143	parallel
Strand 5	A	128	129	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	418	427	anti-parallel
Strand 3	A	314	318	anti-parallel
Strand 4	A	290	292	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	418	427	anti-parallel
Strand 3	A	342	350	anti-parallel
Strand 4	A	389	395	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	330	first strand
Strand 2	A	401	408	anti-parallel
Strand 3	A	357	365	anti-parallel
Strand 4	A	371	381	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	438	first strand
Strand 2	A	587	595	anti-parallel
Strand 3	A	504	510	anti-parallel
Strand 4	A	523	528	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	455	first strand
Strand 2	A	466	472	anti-parallel
Strand 3	A	459	460	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	455	first strand
Strand 2	A	466	472	anti-parallel
Strand 3	A	481	488	anti-parallel
Strand 4	A	565	572	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	554	first strand
Strand 2	A	559	561	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	112	first strand
Strand 2	D	79	83	parallel
Strand 3	D	120	123	parallel
Strand 4	D	139	142	parallel
Strand 5	D	129	130	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	269	first strand
Strand 2	D	418	427	anti-parallel
Strand 3	D	314	318	anti-parallel
Strand 4	D	290	292	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	269	first strand
Strand 2	D	418	427	anti-parallel
Strand 3	D	342	350	anti-parallel
Strand 4	D	389	395	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	330	first strand
Strand 2	D	401	408	anti-parallel
Strand 3	D	357	365	anti-parallel
Strand 4	D	371	381	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	434	438	first strand
Strand 2	D	587	595	anti-parallel
Strand 3	D	504	510	anti-parallel
Strand 4	D	523	528	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	455	first strand
Strand 2	D	466	472	anti-parallel
Strand 3	D	459	460	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	455	first strand
Strand 2	D	466	472	anti-parallel
Strand 3	D	481	489	anti-parallel
Strand 4	D	565	572	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	554	first strand
Strand 2	D	559	561	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	112	first strand
Strand 2	E	79	83	parallel
Strand 3	E	120	123	parallel
Strand 4	E	139	143	parallel
Strand 5	E	128	129	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	178	first strand
Strand 2	E	228	230	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	269	first strand
Strand 2	E	418	427	anti-parallel
Strand 3	E	314	318	anti-parallel
Strand 4	E	290	292	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	269	first strand
Strand 2	E	418	427	anti-parallel
Strand 3	E	342	350	anti-parallel
Strand 4	E	389	395	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	280	281	first strand
Strand 2	E	327	331	anti-parallel
Strand 3	E	401	408	anti-parallel
Strand 4	E	357	365	anti-parallel
Strand 5	E	371	381	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	434	438	first strand
Strand 2	E	587	595	anti-parallel
Strand 3	E	504	510	anti-parallel
Strand 4	E	523	528	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	454	455	first strand
Strand 2	E	466	472	anti-parallel
Strand 3	E	459	460	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	454	455	first strand
Strand 2	E	466	472	anti-parallel
Strand 3	E	481	488	anti-parallel
Strand 4	E	565	572	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	552	554	first strand
Strand 2	E	559	561	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	130	131	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	110	112	first strand
Strand 2	H	79	83	parallel
Strand 3	H	120	123	parallel
Strand 4	H	139	142	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	176	178	first strand
Strand 2	H	228	230	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	265	269	first strand
Strand 2	H	418	427	anti-parallel
Strand 3	H	314	318	anti-parallel
Strand 4	H	290	292	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	265	269	first strand
Strand 2	H	418	427	anti-parallel
Strand 3	H	342	350	anti-parallel
Strand 4	H	389	395	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	280	281	first strand
Strand 2	H	327	331	anti-parallel
Strand 3	H	401	408	anti-parallel
Strand 4	H	357	364	anti-parallel
Strand 5	H	373	381	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	434	438	first strand
Strand 2	H	587	595	anti-parallel
Strand 3	H	504	510	anti-parallel
Strand 4	H	523	528	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	454	455	first strand
Strand 2	H	466	472	anti-parallel
Strand 3	H	459	460	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	454	455	first strand
Strand 2	H	466	472	anti-parallel
Strand 3	H	481	489	anti-parallel
Strand 4	H	571	572	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	552	554	first strand
Strand 2	H	559	561	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UAB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UAB