Analysis of interatomic Contacts of Structural Units in PDB entry:
7UAF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UAF entry

There are 4 chains in PDB entry 7UAF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 66	SER 600
A	ASN 66	SER 600
C	ASN 66	SER 600
D	ASN 66	SER 600

There are 68 helices in PDB entry 7UAF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	70	74	Right-handed 310
Helix 2	AA2	B	88	106	Right-handed alpha
Helix 3	AA3	B	149	162	Right-handed alpha
Helix 4	AA4	B	165	169	Right-handed 310
Helix 5	AA5	B	171	174	Right-handed 310
Helix 6	AA6	B	180	183	Right-handed 310
Helix 7	AA7	B	187	192	Right-handed 310
Helix 8	AA8	B	232	238	Right-handed 310
Helix 9	AA9	B	246	258	Right-handed alpha
Helix 10	AB1	B	275	279	Right-handed 310
Helix 11	AB2	B	411	415	Right-handed 310
Helix 12	AB3	B	440	448	Right-handed alpha
Helix 13	AB4	B	516	520	Right-handed 310
Helix 14	AB5	B	535	539	Right-handed 310
Helix 15	AB6	B	546	551	Right-handed alpha
Helix 16	AB7	B	573	578	Right-handed alpha
Helix 17	AB8	B	597	600	Right-handed 310
Helix 18	AB9	A	70	74	Right-handed 310
Helix 19	AC1	A	88	106	Right-handed alpha
Helix 20	AC2	A	149	162	Right-handed alpha
Helix 21	AC3	A	165	169	Right-handed 310
Helix 22	AC4	A	171	174	Right-handed 310
Helix 23	AC5	A	180	183	Right-handed 310
Helix 24	AC6	A	187	192	Right-handed 310
Helix 25	AC7	A	232	238	Right-handed 310
Helix 26	AC8	A	246	258	Right-handed alpha
Helix 27	AC9	A	275	279	Right-handed 310
Helix 28	AD1	A	411	415	Right-handed 310
Helix 29	AD2	A	440	448	Right-handed alpha
Helix 30	AD3	A	493	497	Right-handed 310
Helix 31	AD4	A	516	520	Right-handed 310
Helix 32	AD5	A	535	539	Right-handed 310
Helix 33	AD6	A	546	551	Right-handed alpha
Helix 34	AD7	A	573	577	Right-handed alpha
Helix 35	AD8	A	597	600	Right-handed 310
Helix 36	AD9	C	70	74	Right-handed 310
Helix 37	AE1	C	88	106	Right-handed alpha
Helix 38	AE2	C	149	161	Right-handed alpha
Helix 39	AE3	C	165	169	Right-handed 310
Helix 40	AE4	C	171	174	Right-handed 310
Helix 41	AE5	C	180	183	Right-handed 310
Helix 42	AE6	C	187	192	Right-handed 310
Helix 43	AE7	C	232	238	Right-handed 310
Helix 44	AE8	C	246	258	Right-handed alpha
Helix 45	AE9	C	275	279	Right-handed 310
Helix 46	AF1	C	411	415	Right-handed 310
Helix 47	AF2	C	440	448	Right-handed alpha
Helix 48	AF3	C	493	497	Right-handed 310
Helix 49	AF4	C	516	520	Right-handed 310
Helix 50	AF5	C	535	539	Right-handed 310
Helix 51	AF6	C	546	550	Right-handed alpha
Helix 52	AF7	C	573	577	Right-handed alpha
Helix 53	AF8	C	597	600	Right-handed 310
Helix 54	AF9	D	70	74	Right-handed 310
Helix 55	AG1	D	88	106	Right-handed alpha
Helix 56	AG2	D	149	162	Right-handed alpha
Helix 57	AG3	D	165	169	Right-handed 310
Helix 58	AG4	D	180	183	Right-handed 310
Helix 59	AG5	D	186	192	Right-handed 310
Helix 60	AG6	D	232	238	Right-handed 310
Helix 61	AG7	D	246	258	Right-handed alpha
Helix 62	AG8	D	275	279	Right-handed 310
Helix 63	AG9	D	411	415	Right-handed 310
Helix 64	AH1	D	440	448	Right-handed alpha
Helix 65	AH2	D	516	520	Right-handed 310
Helix 66	AH3	D	535	539	Right-handed 310
Helix 67	AH4	D	573	578	Right-handed alpha
Helix 68	AH5	D	597	600	Right-handed 310

There are 39 sheets in PDB entry 7UAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	199	200	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	112	first strand
Strand 2	B	79	83	parallel
Strand 3	B	120	123	parallel
Strand 4	B	139	142	parallel
Strand 5	B	129	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	228	230	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	269	first strand
Strand 2	B	418	427	anti-parallel
Strand 3	B	314	318	anti-parallel
Strand 4	B	290	292	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	269	first strand
Strand 2	B	418	427	anti-parallel
Strand 3	B	342	350	anti-parallel
Strand 4	B	389	395	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	327	331	anti-parallel
Strand 3	B	401	408	anti-parallel
Strand 4	B	357	365	anti-parallel
Strand 5	B	371	381	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	438	first strand
Strand 2	B	587	595	anti-parallel
Strand 3	B	504	510	anti-parallel
Strand 4	B	523	528	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	B	466	472	anti-parallel
Strand 3	B	459	460	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	B	466	472	anti-parallel
Strand 3	B	481	489	anti-parallel
Strand 4	B	565	572	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	553	first strand
Strand 2	B	560	561	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	199	200	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	112	first strand
Strand 2	A	79	83	parallel
Strand 3	A	120	123	parallel
Strand 4	A	139	142	parallel
Strand 5	A	129	130	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	228	230	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	418	427	anti-parallel
Strand 3	A	314	318	anti-parallel
Strand 4	A	290	292	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	418	427	anti-parallel
Strand 3	A	342	350	anti-parallel
Strand 4	A	389	395	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	327	331	anti-parallel
Strand 3	A	401	408	anti-parallel
Strand 4	A	357	365	anti-parallel
Strand 5	A	371	381	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	438	first strand
Strand 2	A	587	595	anti-parallel
Strand 3	A	504	510	anti-parallel
Strand 4	A	523	528	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	455	first strand
Strand 2	A	466	472	anti-parallel
Strand 3	A	459	460	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	455	first strand
Strand 2	A	466	472	anti-parallel
Strand 3	A	481	489	anti-parallel
Strand 4	A	565	572	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	553	first strand
Strand 2	A	560	561	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	199	200	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	112	first strand
Strand 2	C	79	83	parallel
Strand 3	C	120	123	parallel
Strand 4	C	139	143	parallel
Strand 5	C	128	130	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	228	230	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	269	first strand
Strand 2	C	418	427	anti-parallel
Strand 3	C	314	318	anti-parallel
Strand 4	C	290	292	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	269	first strand
Strand 2	C	418	427	anti-parallel
Strand 3	C	342	350	anti-parallel
Strand 4	C	389	395	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	327	331	anti-parallel
Strand 3	C	401	408	anti-parallel
Strand 4	C	357	365	anti-parallel
Strand 5	C	371	381	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	438	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	504	510	anti-parallel
Strand 4	C	523	528	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	455	first strand
Strand 2	C	466	472	anti-parallel
Strand 3	C	459	460	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	455	first strand
Strand 2	C	466	472	anti-parallel
Strand 3	C	481	489	anti-parallel
Strand 4	C	565	572	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	553	first strand
Strand 2	C	560	562	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	112	first strand
Strand 2	D	79	83	parallel
Strand 3	D	120	123	parallel
Strand 4	D	139	143	parallel
Strand 5	D	128	130	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	228	230	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	269	first strand
Strand 2	D	418	427	anti-parallel
Strand 3	D	314	318	anti-parallel
Strand 4	D	290	292	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	269	first strand
Strand 2	D	418	427	anti-parallel
Strand 3	D	342	350	anti-parallel
Strand 4	D	389	395	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	281	first strand
Strand 2	D	327	331	anti-parallel
Strand 3	D	401	408	anti-parallel
Strand 4	D	357	365	anti-parallel
Strand 5	D	371	381	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	434	438	first strand
Strand 2	D	587	595	anti-parallel
Strand 3	D	504	510	anti-parallel
Strand 4	D	523	528	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	455	first strand
Strand 2	D	466	472	anti-parallel
Strand 3	D	459	460	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	455	first strand
Strand 2	D	466	472	anti-parallel
Strand 3	D	481	489	anti-parallel
Strand 4	D	565	572	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	551	553	first strand
Strand 2	D	560	562	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UAF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UAF