Analysis of interatomic Contacts of Structural Units in PDB entry:
7UAJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UAJ entry

There are 4 chains in PDB entry 7UAJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 521
B	ILE 3	SER 521
C	LYS 2	SER 520
D	ILE 3	SER 521

There are 94 helices in PDB entry 7UAJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	32	Right-handed alpha
Helix 2	AA2	A	43	54	Right-handed alpha
Helix 3	AA3	A	65	74	Right-handed alpha
Helix 4	AA4	A	83	90	Right-handed alpha
Helix 5	AA5	A	91	98	Right-handed alpha
Helix 6	AA6	A	131	143	Right-handed alpha
Helix 7	AA7	A	154	163	Right-handed alpha
Helix 8	AA8	A	186	202	Right-handed alpha
Helix 9	AA9	A	210	220	Right-handed alpha
Helix 10	AB1	A	229	231	Right-handed 310
Helix 11	AB2	A	232	239	Right-handed alpha
Helix 12	AB3	A	273	284	Right-handed alpha
Helix 13	AB4	A	287	298	Right-handed alpha
Helix 14	AB5	A	305	313	Right-handed alpha
Helix 15	AB6	A	315	328	Right-handed alpha
Helix 16	AB7	A	336	354	Right-handed alpha
Helix 17	AB8	A	357	369	Right-handed alpha
Helix 18	AB9	A	389	397	Right-handed alpha
Helix 19	AC1	A	416	426	Right-handed alpha
Helix 20	AC2	A	441	451	Right-handed alpha
Helix 21	AC3	A	462	471	Right-handed alpha
Helix 22	AC4	A	489	499	Right-handed alpha
Helix 23	AC5	A	514	519	Right-handed alpha
Helix 24	AC6	B	17	32	Right-handed alpha
Helix 25	AC7	B	43	54	Right-handed alpha
Helix 26	AC8	B	67	74	Right-handed alpha
Helix 27	AC9	B	82	90	Right-handed alpha
Helix 28	AD1	B	91	98	Right-handed alpha
Helix 29	AD2	B	129	131	Right-handed 310
Helix 30	AD3	B	132	143	Right-handed alpha
Helix 31	AD4	B	154	163	Right-handed alpha
Helix 32	AD5	B	186	202	Right-handed alpha
Helix 33	AD6	B	210	220	Right-handed alpha
Helix 34	AD7	B	229	231	Right-handed 310
Helix 35	AD8	B	232	239	Right-handed alpha
Helix 36	AD9	B	273	284	Right-handed alpha
Helix 37	AE1	B	287	298	Right-handed alpha
Helix 38	AE2	B	305	309	Right-handed 310
Helix 39	AE3	B	315	328	Right-handed alpha
Helix 40	AE4	B	336	353	Right-handed alpha
Helix 41	AE5	B	358	370	Right-handed alpha
Helix 42	AE6	B	389	397	Right-handed alpha
Helix 43	AE7	B	416	426	Right-handed alpha
Helix 44	AE8	B	441	451	Right-handed alpha
Helix 45	AE9	B	462	471	Right-handed alpha
Helix 46	AF1	B	489	500	Right-handed alpha
Helix 47	AF2	B	514	519	Right-handed alpha
Helix 48	AF3	C	17	33	Right-handed alpha
Helix 49	AF4	C	43	55	Right-handed alpha
Helix 50	AF5	C	65	75	Right-handed alpha
Helix 51	AF6	C	83	90	Right-handed alpha
Helix 52	AF7	C	91	98	Right-handed alpha
Helix 53	AF8	C	131	143	Right-handed alpha
Helix 54	AF9	C	154	163	Right-handed alpha
Helix 55	AG1	C	186	202	Right-handed alpha
Helix 56	AG2	C	210	220	Right-handed alpha
Helix 57	AG3	C	229	231	Right-handed 310
Helix 58	AG4	C	232	239	Right-handed alpha
Helix 59	AG5	C	273	283	Right-handed alpha
Helix 60	AG6	C	287	298	Right-handed alpha
Helix 61	AG7	C	305	310	Right-handed alpha
Helix 62	AG8	C	311	314	Right-handed 310
Helix 63	AG9	C	315	328	Right-handed alpha
Helix 64	AH1	C	336	353	Right-handed alpha
Helix 65	AH2	C	357	371	Right-handed alpha
Helix 66	AH3	C	389	397	Right-handed alpha
Helix 67	AH4	C	416	426	Right-handed alpha
Helix 68	AH5	C	441	451	Right-handed alpha
Helix 69	AH6	C	463	470	Right-handed alpha
Helix 70	AH7	C	489	499	Right-handed alpha
Helix 71	AH8	C	515	519	Right-handed alpha
Helix 72	AH9	D	17	32	Right-handed alpha
Helix 73	AI1	D	43	55	Right-handed alpha
Helix 74	AI2	D	65	74	Right-handed alpha
Helix 75	AI3	D	84	90	Right-handed alpha
Helix 76	AI4	D	91	98	Right-handed alpha
Helix 77	AI5	D	132	143	Right-handed alpha
Helix 78	AI6	D	154	164	Right-handed alpha
Helix 79	AI7	D	186	202	Right-handed alpha
Helix 80	AI8	D	210	221	Right-handed alpha
Helix 81	AI9	D	229	231	Right-handed 310
Helix 82	AJ1	D	232	239	Right-handed alpha
Helix 83	AJ2	D	273	284	Right-handed alpha
Helix 84	AJ3	D	287	298	Right-handed alpha
Helix 85	AJ4	D	305	312	Right-handed alpha
Helix 86	AJ5	D	315	328	Right-handed alpha
Helix 87	AJ6	D	336	354	Right-handed alpha
Helix 88	AJ7	D	357	371	Right-handed alpha
Helix 89	AJ8	D	389	397	Right-handed alpha
Helix 90	AJ9	D	416	426	Right-handed alpha
Helix 91	AK1	D	441	450	Right-handed alpha
Helix 92	AK2	D	462	471	Right-handed alpha
Helix 93	AK3	D	489	500	Right-handed alpha
Helix 94	AK4	D	514	519	Right-handed alpha

There are 22 sheets in PDB entry 7UAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	9	11	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	107	112	anti-parallel
Strand 6	A	302	303	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	9	11	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	103	104	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	115	118	anti-parallel
Strand 3	A	245	246	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	433	first strand
Strand 2	A	436	438	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	461	first strand
Strand 2	A	503	506	anti-parallel
Strand 3	A	509	511	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	8	11	parallel
Strand 3	B	60	64	parallel
Strand 4	B	261	267	anti-parallel
Strand 5	B	107	112	anti-parallel
Strand 6	B	302	303	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	223	228	parallel
Strand 3	B	115	119	anti-parallel
Strand 4	B	243	246	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	254	255	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	433	first strand
Strand 2	B	436	438	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	461	first strand
Strand 2	B	503	506	anti-parallel
Strand 3	B	509	512	anti-parallel
Strand 4	B	480	481	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	9	11	parallel
Strand 3	C	60	64	parallel
Strand 4	C	259	267	anti-parallel
Strand 5	C	107	112	anti-parallel
Strand 6	C	302	303	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	9	11	parallel
Strand 3	C	60	64	parallel
Strand 4	C	259	267	anti-parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	103	104	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	223	228	parallel
Strand 3	C	115	119	anti-parallel
Strand 4	C	243	246	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	433	first strand
Strand 2	C	436	438	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	462	first strand
Strand 2	C	502	506	anti-parallel
Strand 3	C	509	511	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	39	first strand
Strand 2	D	8	11	parallel
Strand 3	D	60	64	parallel
Strand 4	D	259	267	anti-parallel
Strand 5	D	107	112	anti-parallel
Strand 6	D	302	303	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	39	first strand
Strand 2	D	8	11	parallel
Strand 3	D	60	64	parallel
Strand 4	D	259	267	anti-parallel
Strand 5	D	329	330	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	223	228	parallel
Strand 3	D	115	119	anti-parallel
Strand 4	D	243	246	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	433	first strand
Strand 2	D	436	438	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	459	461	first strand
Strand 2	D	503	505	anti-parallel
Strand 3	D	510	511	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UAJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UAJ