Analysis of interatomic Contacts of Structural Units in PDB entry:
7UB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UB8 entry

There are 2 chains in PDB entry 7UB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3ALA 228
B
 ASP 3GLY 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7UB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 22Right-handed alpha
Helix 2
AA2
A
25 29Right-handed 310
Helix 3
AA3
A
39 49Right-handed alpha
Helix 4
AA4
A
58 73Right-handed alpha
Helix 5
AA5
A
86 88Right-handed 310
Helix 6
AA6
A
89 97Right-handed alpha
Helix 7
AA7
A
105 116Right-handed alpha
Helix 8
AA8
A
141 143Right-handed 310
Helix 9
AA9
A
144 154Right-handed alpha
Helix 10
AB1
A
172 192Right-handed alpha
Helix 11
AB2
A
204 206Right-handed 310
Helix 12
AB3
A
207 215Right-handed alpha
Helix 13
AB4
A
222 227Right-handed alpha
Helix 14
AB5
B
4 22Right-handed alpha
Helix 15
AB6
B
25 29Right-handed 310
Helix 16
AB7
B
39 49Right-handed alpha
Helix 17
AB8
B
58 73Right-handed alpha
Helix 18
AB9
B
86 88Right-handed 310
Helix 19
AC1
B
89 97Right-handed alpha
Helix 20
AC2
B
105 116Right-handed alpha
Helix 21
AC3
B
141 143Right-handed 310
Helix 22
AC4
B
144 155Right-handed alpha
Helix 23
AC5
B
172 194Right-handed alpha
Helix 24
AC6
B
204 206Right-handed 310
Helix 25
AC7
B
207 215Right-handed alpha
Helix 26
AC8
B
222 227Right-handed alpha
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There are 2 sheets in PDB entry 7UB8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
53 56parallel
Strand 3
A
78 81parallel
Strand 4
A
99 103parallel
Strand 5
A
123 129parallel
Strand 6
A
158 165parallel
Strand 7
A
199 201parallel
Strand 8
A
218 221parallel
Strand 9
A
30 34parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
53 56parallel
Strand 3
B
78 81parallel
Strand 4
B
99 103parallel
Strand 5
B
123 129parallel
Strand 6
B
158 165parallel
Strand 7
B
199 201parallel
Strand 8
B
218 221parallel
Strand 9
B
30 34parallel
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