Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UBB entry

There are 8 chains in PDB entry 7UBB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	TYR 110	ILE 221
D	TYR 110	ILE 221
E	TYR 110	ILE 221
F	TYR 110	ILE 221
G	TYR 110	ILE 221
H	TYR 110	ILE 221
I	TYR 110	ILE 221
J	TYR 110	ILE 221

There are 32 helices in PDB entry 7UBB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	110	121	Right-handed alpha
Helix 2	AA2	C	179	189	Right-handed alpha
Helix 3	AA3	C	193	199	Right-handed alpha
Helix 4	AA4	C	201	216	Right-handed alpha
Helix 5	AA5	D	111	121	Right-handed alpha
Helix 6	AA6	D	179	189	Right-handed alpha
Helix 7	AA7	D	193	199	Right-handed alpha
Helix 8	AA8	D	201	216	Right-handed alpha
Helix 9	AA9	E	111	121	Right-handed alpha
Helix 10	AB1	E	179	189	Right-handed alpha
Helix 11	AB2	E	193	199	Right-handed alpha
Helix 12	AB3	E	201	216	Right-handed alpha
Helix 13	AB4	F	111	121	Right-handed alpha
Helix 14	AB5	F	179	189	Right-handed alpha
Helix 15	AB6	F	193	199	Right-handed alpha
Helix 16	AB7	F	201	216	Right-handed alpha
Helix 17	AB8	G	111	121	Right-handed alpha
Helix 18	AB9	G	179	189	Right-handed alpha
Helix 19	AC1	G	193	199	Right-handed alpha
Helix 20	AC2	G	201	216	Right-handed alpha
Helix 21	AC3	H	111	121	Right-handed alpha
Helix 22	AC4	H	179	189	Right-handed alpha
Helix 23	AC5	H	193	199	Right-handed alpha
Helix 24	AC6	H	201	216	Right-handed alpha
Helix 25	AC7	I	111	121	Right-handed alpha
Helix 26	AC8	I	179	189	Right-handed alpha
Helix 27	AC9	I	193	199	Right-handed alpha
Helix 28	AD1	I	201	216	Right-handed alpha
Helix 29	AD2	J	111	121	Right-handed alpha
Helix 30	AD3	J	179	189	Right-handed alpha
Helix 31	AD4	J	193	199	Right-handed alpha
Helix 32	AD5	J	201	216	Right-handed alpha

There are 16 sheets in PDB entry 7UBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	132	first strand
Strand 2	C	158	167	anti-parallel
Strand 3	C	172	178	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	139	first strand
Strand 2	C	146	148	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	132	first strand
Strand 2	D	158	167	anti-parallel
Strand 3	D	172	178	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	139	first strand
Strand 2	D	146	148	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	132	first strand
Strand 2	E	158	167	anti-parallel
Strand 3	E	172	178	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	139	first strand
Strand 2	E	146	148	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	132	first strand
Strand 2	F	158	167	anti-parallel
Strand 3	F	172	178	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	139	first strand
Strand 2	F	146	148	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	132	first strand
Strand 2	G	158	167	anti-parallel
Strand 3	G	172	178	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	139	first strand
Strand 2	G	146	148	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	132	first strand
Strand 2	H	158	167	anti-parallel
Strand 3	H	172	178	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	139	first strand
Strand 2	H	146	148	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	132	first strand
Strand 2	I	158	167	anti-parallel
Strand 3	I	172	178	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	139	first strand
Strand 2	I	146	148	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	132	first strand
Strand 2	J	158	167	anti-parallel
Strand 3	J	172	178	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	136	139	first strand
Strand 2	J	146	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UBB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBB