Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UBM entry

There are 8 chains in PDB entry 7UBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	T 3	T 59
2	A 3	A 59
A	THR 6	ARG 235
B	THR 6	ASP 233
C	TYR 3	GLU 1342
D	GLU 15	GLY 1376
E	ALA 2	GLU 76
F	GLU 90	THR 552

There are126 helices in PDB entry 7UBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	154	161	Right-handed alpha
Helix 4	AA4	A	212	234	Right-handed alpha
Helix 5	AA5	B	34	50	Right-handed alpha
Helix 6	AA6	B	77	87	Right-handed alpha
Helix 7	AA7	B	113	115	Right-handed 310
Helix 8	AA8	B	154	162	Right-handed alpha
Helix 9	AA9	B	212	229	Right-handed alpha
Helix 10	AB1	C	28	40	Right-handed alpha
Helix 11	AB2	C	48	56	Right-handed alpha
Helix 12	AB3	C	81	89	Right-handed alpha
Helix 13	AB4	C	207	213	Right-handed alpha
Helix 14	AB5	C	216	225	Right-handed alpha
Helix 15	AB6	C	270	281	Right-handed alpha
Helix 16	AB7	C	318	329	Right-handed alpha
Helix 17	AB8	C	345	354	Right-handed alpha
Helix 18	AB9	C	358	371	Right-handed alpha
Helix 19	AC1	C	377	390	Right-handed alpha
Helix 20	AC2	C	400	409	Right-handed alpha
Helix 21	AC3	C	421	438	Right-handed alpha
Helix 22	AC4	C	455	482	Right-handed alpha
Helix 23	AC5	C	488	493	Right-handed alpha
Helix 24	AC6	C	495	509	Right-handed alpha
Helix 25	AC7	C	519	528	Right-handed alpha
Helix 26	AC8	C	551	555	Right-handed 310
Helix 27	AC9	C	670	674	Right-handed 310
Helix 28	AD1	C	675	686	Right-handed alpha
Helix 29	AD2	C	687	689	Right-handed 310
Helix 30	AD3	C	704	712	Right-handed alpha
Helix 31	AD4	C	738	741	Right-handed 310
Helix 32	AD5	C	820	825	Right-handed alpha
Helix 33	AD6	C	896	906	Right-handed alpha
Helix 34	AD7	C	942	983	Right-handed alpha
Helix 35	AD8	C	986	991	Right-handed alpha
Helix 36	AD9	C	993	998	Right-handed 310
Helix 37	AE1	C	1005	1038	Right-handed alpha
Helix 38	AE2	C	1099	1103	Right-handed 310
Helix 39	AE3	C	1109	1135	Right-handed alpha
Helix 40	AE4	C	1138	1150	Right-handed alpha
Helix 41	AE5	C	1165	1177	Right-handed alpha
Helix 42	AE6	C	1191	1202	Right-handed alpha
Helix 43	AE7	C	1238	1243	Right-handed alpha
Helix 44	AE8	C	1271	1282	Right-handed alpha
Helix 45	AE9	C	1283	1292	Right-handed alpha
Helix 46	AF1	C	1297	1310	Right-handed alpha
Helix 47	AF2	C	1320	1333	Right-handed alpha
Helix 48	AF3	D	26	33	Right-handed alpha
Helix 49	AF4	D	94	100	Right-handed 310
Helix 50	AF5	D	114	119	Right-handed alpha
Helix 51	AF6	D	123	129	Right-handed alpha
Helix 52	AF7	D	131	140	Right-handed alpha
Helix 53	AF8	D	161	172	Right-handed alpha
Helix 54	AF9	D	181	192	Right-handed alpha
Helix 55	AG1	D	193	205	Right-handed alpha
Helix 56	AG2	D	210	231	Right-handed alpha
Helix 57	AG3	D	233	236	Right-handed 310
Helix 58	AG4	D	263	285	Right-handed alpha
Helix 59	AG5	D	288	308	Right-handed alpha
Helix 60	AG6	D	326	332	Right-handed alpha
Helix 61	AG7	D	336	342	Right-handed alpha
Helix 62	AG8	D	370	377	Right-handed alpha
Helix 63	AG9	D	377	388	Right-handed alpha
Helix 64	AH1	D	393	404	Right-handed alpha
Helix 65	AH2	D	405	417	Right-handed alpha
Helix 66	AH3	D	430	432	Right-handed 310
Helix 67	AH4	D	450	452	Right-handed 310
Helix 68	AH5	D	453	458	Right-handed alpha
Helix 69	AH6	D	473	483	Right-handed alpha
Helix 70	AH7	D	504	515	Right-handed alpha
Helix 71	AH8	D	529	540	Right-handed alpha
Helix 72	AH9	D	574	581	Right-handed alpha
Helix 73	AI1	D	588	592	Right-handed 310
Helix 74	AI2	D	597	613	Right-handed alpha
Helix 75	AI3	D	614	636	Right-handed alpha
Helix 76	AI4	D	649	670	Right-handed alpha
Helix 77	AI5	D	674	704	Right-handed alpha
Helix 78	AI6	D	720	728	Right-handed alpha
Helix 79	AI7	D	733	742	Right-handed alpha
Helix 80	AI8	D	768	804	Right-handed alpha
Helix 81	AI9	D	834	840	Right-handed alpha
Helix 82	AJ1	D	865	875	Right-handed alpha
Helix 83	AJ2	D	896	900	Right-handed alpha
Helix 84	AJ3	D	914	925	Right-handed alpha
Helix 85	AJ4	D	1068	1072	Right-handed 310
Helix 86	AJ5	D	1137	1147	Right-handed alpha
Helix 87	AJ6	D	1216	1225	Right-handed alpha
Helix 88	AJ7	D	1225	1244	Right-handed alpha
Helix 89	AJ8	D	1249	1261	Right-handed alpha
Helix 90	AJ9	D	1282	1296	Right-handed alpha
Helix 91	AK1	D	1308	1315	Right-handed alpha
Helix 92	AK2	D	1318	1326	Right-handed alpha
Helix 93	AK3	D	1327	1339	Right-handed alpha
Helix 94	AK4	D	1346	1354	Right-handed alpha
Helix 95	AK5	D	1359	1361	Right-handed 310
Helix 96	AK6	D	1362	1375	Right-handed alpha
Helix 97	AK7	E	6	14	Right-handed alpha
Helix 98	AK8	E	15	32	Right-handed alpha
Helix 99	AK9	E	45	57	Right-handed alpha
Helix 100	AL1	E	60	76	Right-handed alpha
Helix 101	AL2	F	96	105	Right-handed alpha
Helix 102	AL3	F	112	136	Right-handed alpha
Helix 103	AL4	F	137	152	Right-handed alpha
Helix 104	AL5	F	157	160	Right-handed 310
Helix 105	AL6	F	216	234	Right-handed alpha
Helix 106	AL7	F	243	257	Right-handed alpha
Helix 107	AL8	F	262	293	Right-handed alpha
Helix 108	AL9	F	299	305	Right-handed alpha
Helix 109	AM1	F	313	321	Right-handed alpha
Helix 110	AM2	F	329	332	Right-handed 310
Helix 111	AM3	F	333	352	Right-handed alpha
Helix 112	AM4	F	354	381	Right-handed alpha
Helix 113	AM5	F	383	392	Right-handed alpha
Helix 114	AM6	F	400	418	Right-handed alpha
Helix 115	AM7	F	427	447	Right-handed alpha
Helix 116	AM8	F	553	564	Right-handed alpha
Helix 117	AM9	F	572	580	Right-handed alpha
Helix 118	AN1	F	584	599	Right-handed alpha
Helix 119	AN2	Q	46	56	Right-handed alpha
Helix 120	AN3	Q	61	78	Right-handed alpha
Helix 121	AN4	Q	79	81	Right-handed 310
Helix 122	AN5	Q	88	109	Right-handed alpha
Helix 123	AN6	Q	129	137	Right-handed alpha
Helix 124	AN7	Q	156	165	Right-handed alpha
Helix 125	AN8	Q	172	179	Right-handed alpha
Helix 126	AN9	Q	179	207	Right-handed alpha

There are 47 sheets in PDB entry 7UBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	18	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	180	189	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	97	105	anti-parallel
Strand 3	A	139	150	anti-parallel
Strand 4	A	52	61	anti-parallel
Strand 5	A	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	18	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	199	207	anti-parallel
Strand 4	B	180	189	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	105	first strand
Strand 2	B	139	150	anti-parallel
Strand 3	B	52	61	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	129	131	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	104	anti-parallel
Strand 4	C	117	128	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	138	first strand
Strand 2	C	141	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	529	531	parallel
Strand 4	C	572	574	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	176	177	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	160	first strand
Strand 2	C	171	173	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	195	197	anti-parallel
Strand 3	C	204	205	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	287	first strand
Strand 2	C	236	240	anti-parallel
Strand 3	C	227	233	anti-parallel
Strand 4	C	334	336	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	251	first strand
Strand 2	C	267	268	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	309	311	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	607	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	652	654	anti-parallel
Strand 4	C	616	617	parallel
Strand 5	C	633	638	anti-parallel
Strand 6	C	641	646	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1209	1210	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1065	1068	anti-parallel
Strand 4	C	1073	1079	anti-parallel
Strand 5	C	816	818	parallel
Strand 6	C	1096	1098	anti-parallel
Strand 7	C	798	804	parallel
Strand 8	C	1225	1234	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	846	847	first strand
Strand 2	C	830	843	anti-parallel
Strand 3	C	1046	1058	anti-parallel
Strand 4	C	927	935	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	849	850	first strand
Strand 2	C	886	887	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	424	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel
Strand 7	D	447	449	anti-parallel
Strand 8	D	350	357	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1268	1270	first strand
Strand 2	D	345	347	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1339	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	102	112	parallel
Strand 3	D	238	244	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	149	anti-parallel
Strand 3	D	176	179	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	547	557	parallel
Strand 3	D	563	573	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	811	first strand
Strand 2	D	894	895	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	958	961	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	991	995	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	965	966	first strand
Strand 2	D	973	975	anti-parallel
Strand 3	D	1002	1003	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1024	1026	first strand
Strand 2	D	1123	1125	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1033	1034	first strand
Strand 2	D	1114	1115	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1046	1048	first strand
Strand 2	D	1059	1061	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1174	1178	first strand
Strand 2	D	1161	1167	anti-parallel
Strand 3	D	1203	1204	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1279	1281	first strand
Strand 2	D	1263	1268	anti-parallel
Strand 3	D	1301	1305	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	164	first strand
Strand 2	F	260	261	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	127	128	first strand
Strand 2	Q	141	142	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBM