Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UBS entry

There are 4 chains in PDB entry 7UBS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 561	ASN 732
B	ILE 560	ASN 732
C	ASN 588	ASN 732
D	ASN 586	ASN 715

There are 22 helices in PDB entry 7UBS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	663	667	Right-handed alpha
Helix 2	AA2	A	682	685	Right-handed 310
Helix 3	AA3	B	663	667	Right-handed alpha
Helix 4	AA4	B	682	685	Right-handed 310
Helix 5	AA5	C	663	667	Right-handed alpha
Helix 6	AA6	C	682	685	Right-handed 310
Helix 7	AA7	D	663	667	Right-handed alpha
Helix 8	AA8	D	682	685	Right-handed 310
Helix 9	AA9	H	28	31	Right-handed 310
Helix 10	AB1	H	87	91	Right-handed 310
Helix 11	AB2	H	226	230	Right-handed 310
Helix 12	AB3	I	28	31	Right-handed 310
Helix 13	AB4	I	87	91	Right-handed 310
Helix 14	AB5	I	226	230	Right-handed 310
Helix 15	AB6	J	28	31	Right-handed 310
Helix 16	AB7	J	62	65	Right-handed 310
Helix 17	AB8	J	74	76	Right-handed 310
Helix 18	AB9	J	87	91	Right-handed 310
Helix 19	AC1	J	226	230	Right-handed 310
Helix 20	AC2	K	28	31	Right-handed 310
Helix 21	AC3	K	87	91	Right-handed 310
Helix 22	AC4	K	226	230	Right-handed 310

There are 37 sheets in PDB entry 7UBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	652	first strand
Strand 2	A	658	662	anti-parallel
Strand 3	A	562	564	anti-parallel
Strand 4	B	563	564	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	642	first strand
Strand 2	A	700	707	anti-parallel
Strand 3	A	720	727	anti-parallel
Strand 4	A	608	615	parallel
Strand 5	A	574	577	parallel
Strand 6	C	590	594	parallel
Strand 7	C	621	625	parallel
Strand 8	C	687	691	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	691	first strand
Strand 2	A	621	625	anti-parallel
Strand 3	A	589	594	parallel
Strand 4	A	580	583	anti-parallel
Strand 5	C	608	615	anti-parallel
Strand 6	C	720	727	parallel
Strand 7	C	700	707	anti-parallel
Strand 8	C	640	642	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	676	first strand
Strand 2	A	679	680	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	716	717	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	642	first strand
Strand 2	B	700	707	anti-parallel
Strand 3	B	720	727	anti-parallel
Strand 4	B	608	615	parallel
Strand 5	B	574	577	parallel
Strand 6	D	590	594	parallel
Strand 7	D	621	625	parallel
Strand 8	D	687	691	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	580	583	first strand
Strand 2	B	589	594	anti-parallel
Strand 3	B	621	625	parallel
Strand 4	B	687	691	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	652	first strand
Strand 2	B	659	662	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	675	676	first strand
Strand 2	B	679	680	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	713	first strand
Strand 2	B	716	717	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	654	first strand
Strand 2	C	657	662	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	713	first strand
Strand 2	C	716	717	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	608	615	first strand
Strand 2	D	720	727	parallel
Strand 3	D	700	707	anti-parallel
Strand 4	D	640	642	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	654	first strand
Strand 2	D	657	662	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	675	676	first strand
Strand 2	D	679	680	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	712	713	first strand
Strand 2	D	716	717	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	145	147	first strand
Strand 2	H	160	166	anti-parallel
Strand 3	H	217	222	anti-parallel
Strand 4	H	209	214	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	153	first strand
Strand 2	H	249	252	parallel
Strand 3	H	231	237	anti-parallel
Strand 4	H	180	185	anti-parallel
Strand 5	H	192	196	anti-parallel
Strand 6	H	200	201	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	153	first strand
Strand 2	H	249	252	parallel
Strand 3	H	231	237	anti-parallel
Strand 4	H	244	245	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	171	172	first strand
Strand 2	H	177	178	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	115	119	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	45	52	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	145	147	first strand
Strand 2	I	160	166	anti-parallel
Strand 3	I	217	222	anti-parallel
Strand 4	I	209	214	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	155	first strand
Strand 2	I	249	254	parallel
Strand 3	I	231	237	anti-parallel
Strand 4	I	180	185	anti-parallel
Strand 5	I	192	196	anti-parallel
Strand 6	I	200	201	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	155	first strand
Strand 2	I	249	254	parallel
Strand 3	I	231	237	anti-parallel
Strand 4	I	244	245	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	115	119	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	45	52	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	145	147	first strand
Strand 2	J	160	166	anti-parallel
Strand 3	J	217	222	anti-parallel
Strand 4	J	209	214	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	151	154	first strand
Strand 2	J	249	253	parallel
Strand 3	J	231	237	anti-parallel
Strand 4	J	180	185	anti-parallel
Strand 5	J	192	196	anti-parallel
Strand 6	J	200	201	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	151	154	first strand
Strand 2	J	249	253	parallel
Strand 3	J	231	237	anti-parallel
Strand 4	J	244	245	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	115	119	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	45	52	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	145	147	first strand
Strand 2	K	160	166	anti-parallel
Strand 3	K	217	222	anti-parallel
Strand 4	K	209	214	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	151	154	first strand
Strand 2	K	249	253	parallel
Strand 3	K	231	237	anti-parallel
Strand 4	K	180	185	anti-parallel
Strand 5	K	192	196	anti-parallel
Strand 6	K	200	201	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	151	154	first strand
Strand 2	K	249	253	parallel
Strand 3	K	231	237	anti-parallel
Strand 4	K	244	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UBS

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBS