Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UBT entry

There is 1 chain in PDB entry 7UBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 138LYS 700
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7UBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
139 187Right-handed alpha
Helix 2
AA2
A
195 250Right-handed alpha
Helix 3
AA3
A
250 263Right-handed alpha
Helix 4
AA4
A
272 303Right-handed alpha
Helix 5
AA5
A
308 331Right-handed alpha
Helix 6
AA6
A
376 384Right-handed alpha
Helix 7
AA7
A
434 437Right-handed 310
Helix 8
AA8
A
474 489Right-handed alpha
Helix 9
AA9
A
504 520Right-handed alpha
Helix 10
AB1
A
526 539Right-handed alpha
Helix 11
AB2
A
544 549Right-handed 310
Helix 12
AB3
A
555 560Right-handed alpha
Helix 13
AB4
A
569 585Right-handed alpha
Helix 14
AB5
A
585 591Right-handed alpha
Helix 15
AB6
A
599 608Right-handed alpha
Helix 16
AB7
A
647 654Right-handed alpha
Helix 17
AB8
A
655 663Right-handed alpha
Helix 18
AB9
A
675 680Right-handed alpha
Helix 19
AC1
A
681 683Right-handed 310
Helix 20
AC2
A
689 693Right-handed 310
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There are 6 sheets in PDB entry 7UBT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
347 354anti-parallel
Strand 3
A
411 424anti-parallel
Strand 4
A
394 397anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
347 354anti-parallel
Strand 3
A
411 424anti-parallel
Strand 4
A
404 406anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
466 469parallel
Strand 3
A
439 449anti-parallel
Strand 4
A
368 375anti-parallel
Strand 5
A
400 402anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
466 469parallel
Strand 3
A
439 449anti-parallel
Strand 4
A
456 462anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 503first strand
Strand 2
A
552 554anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
640 642first strand
Strand 2
A
627 632anti-parallel
Strand 3
A
614 619anti-parallel
Strand 4
A
668 669parallel
Strand 5
A
673 674anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il