Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UBU entry

There are 9 chains in PDB entry 7UBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 133VAL 889
P
 ARG 2ARG 8
P
 SER 10ALA 24
B
 T 1 T 6
B
 T 8 T 18
C
 A 1 T 9
C
 A 11 A 18
Q
 SER 0ARG 8
Q
 SER 10THR 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7UBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 151Right-handed alpha
Helix 2
AA2
A
152 155Right-handed 310
Helix 3
AA3
A
233 239Right-handed 310
Helix 4
AA4
A
279 288Right-handed alpha
Helix 5
AA5
A
300 303Right-handed 310
Helix 6
AA6
A
351 365Right-handed alpha
Helix 7
AA7
A
377 388Right-handed alpha
Helix 8
AA8
A
397 415Right-handed alpha
Helix 9
AA9
A
470 474Right-handed 310
Helix 10
AB1
A
480 483Right-handed 310
Helix 11
AB2
A
485 500Right-handed alpha
Helix 12
AB3
A
535 552Right-handed alpha
Helix 13
AB4
A
563 569Right-handed 310
Helix 14
AB5
A
570 583Right-handed alpha
Helix 15
AB6
A
595 598Right-handed 310
Helix 16
AB7
A
634 641Right-handed 310
Helix 17
AB8
A
645 649Right-handed 310
Helix 18
AB9
A
657 663Right-handed alpha
Helix 19
AC1
A
685 692Right-handed alpha
Helix 20
AC2
A
723 732Right-handed alpha
Helix 21
AC3
A
740 744Right-handed 310
Helix 22
AC4
A
751 753Right-handed 310
Helix 23
AC5
A
774 780Right-handed alpha
Helix 24
AC6
A
822 830Right-handed alpha
Helix 25
AC7
A
841 852Right-handed alpha
Helix 26
AC8
A
854 870Right-handed alpha
Helix 27
AC9
A
883 887Right-handed 310
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There are 11 sheets in PDB entry 7UBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
178 181anti-parallel
Strand 3
A
184 187anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
203 213anti-parallel
Strand 3
A
218 226anti-parallel
Strand 4
A
252 261anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
203 213anti-parallel
Strand 3
A
191 194anti-parallel
Strand 4
A
265 268anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
292 294parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 299first strand
Strand 2
A
304 307anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
366 374parallel
Strand 3
A
339 346parallel
Strand 4
A
510 513parallel
Strand 5
A
555 561parallel
Strand 6
A
604 611anti-parallel
Strand 7
A
586 593anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 478first strand
Strand 2
A
460 466anti-parallel
Strand 3
A
440 451anti-parallel
Strand 4
Q
6 8anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 621first strand
Strand 2
A
879 880parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 677first strand
Strand 2
A
714 715anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
747 749first strand
Strand 2
A
755 757anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 791first strand
Strand 2
A
811 813parallel
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