Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UBX entry

There are 4 chains in PDB entry 7UBX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 1080	THR 1463
D	GLN 1	SER 121
B	THR 1080	ASP 1464
C	GLN 1	SER 121

There are 25 helices in PDB entry 7UBX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1080	1087	Right-handed alpha
Helix 2	AA2	A	1118	1130	Right-handed alpha
Helix 3	AA3	A	1130	1136	Right-handed alpha
Helix 4	AA4	A	1204	1209	Right-handed alpha
Helix 5	AA5	A	1247	1260	Right-handed alpha
Helix 6	AA6	A	1306	1311	Right-handed alpha
Helix 7	AA7	A	1433	1440	Right-handed alpha
Helix 8	AA8	A	1440	1451	Right-handed alpha
Helix 9	AA9	D	28	32	Right-handed 310
Helix 10	AB1	D	61	64	Right-handed 310
Helix 11	AB2	D	73	75	Right-handed 310
Helix 12	AB3	D	86	90	Right-handed 310
Helix 13	AB4	D	102	108	Right-handed alpha
Helix 14	AB5	B	1081	1093	Right-handed alpha
Helix 15	AB6	B	1118	1136	Right-handed alpha
Helix 16	AB7	B	1204	1209	Right-handed alpha
Helix 17	AB8	B	1247	1260	Right-handed alpha
Helix 18	AB9	B	1306	1311	Right-handed alpha
Helix 19	AC1	B	1434	1440	Right-handed alpha
Helix 20	AC2	B	1440	1451	Right-handed alpha
Helix 21	AC3	C	28	32	Right-handed 310
Helix 22	AC4	C	61	64	Right-handed 310
Helix 23	AC5	C	73	75	Right-handed 310
Helix 24	AC6	C	86	90	Right-handed 310
Helix 25	AC7	C	102	108	Right-handed alpha

There are 16 sheets in PDB entry 7UBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1107	1109	first strand
Strand 2	A	1112	1114	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1138	1141	first strand
Strand 2	A	1145	1148	anti-parallel
Strand 3	A	1221	1223	parallel
Strand 4	A	1296	1300	parallel
Strand 5	A	1323	1327	parallel
Strand 6	A	1344	1348	parallel
Strand 7	A	1403	1408	parallel
Strand 8	A	1414	1420	anti-parallel
Strand 9	A	1425	1432	anti-parallel
Strand 10	A	1458	1462	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1163	1166	first strand
Strand 2	A	1154	1158	anti-parallel
Strand 3	A	1286	1291	parallel
Strand 4	A	1313	1318	parallel
Strand 5	A	1334	1339	parallel
Strand 6	A	1388	1394	parallel
Strand 7	A	1382	1385	anti-parallel
Strand 8	A	1377	1379	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1181	1183	first strand
Strand 2	A	1186	1188	anti-parallel
Strand 3	A	1267	1269	parallel
Strand 4	A	1273	1283	anti-parallel
Strand 5	A	1230	1238	anti-parallel
Strand 6	A	1169	1171	parallel
Strand 7	A	1202	1203	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1173	1175	first strand
Strand 2	A	1194	1196	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1354	1359	first strand
Strand 2	A	1362	1368	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	91	97	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1107	1109	first strand
Strand 2	B	1112	1114	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1138	1141	first strand
Strand 2	B	1145	1148	anti-parallel
Strand 3	B	1221	1223	parallel
Strand 4	B	1296	1300	parallel
Strand 5	B	1323	1327	parallel
Strand 6	B	1344	1348	parallel
Strand 7	B	1403	1410	parallel
Strand 8	B	1413	1420	anti-parallel
Strand 9	B	1425	1433	anti-parallel
Strand 10	B	1459	1463	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1163	1166	first strand
Strand 2	B	1154	1158	anti-parallel
Strand 3	B	1286	1291	parallel
Strand 4	B	1313	1318	parallel
Strand 5	B	1334	1339	parallel
Strand 6	B	1388	1394	parallel
Strand 7	B	1382	1385	anti-parallel
Strand 8	B	1377	1379	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1181	1183	first strand
Strand 2	B	1186	1188	anti-parallel
Strand 3	B	1267	1269	parallel
Strand 4	B	1273	1283	anti-parallel
Strand 5	B	1230	1238	anti-parallel
Strand 6	B	1169	1171	parallel
Strand 7	B	1202	1203	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1174	1175	first strand
Strand 2	B	1194	1195	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1354	1359	first strand
Strand 2	B	1362	1368	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	115	119	parallel
Strand 3	C	91	97	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UBX

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBX