Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UBY entry

There are 4 chains in PDB entry 7UBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 2LEU 542
D
 LEU 4SER 127
A
 MET 1LEU 542
C
 GLN 3SER 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 7UBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
5 11Right-handed alpha
Helix 2
AA2
B
23 36Right-handed alpha
Helix 3
AA3
B
40 62Right-handed alpha
Helix 4
AA4
B
67 89Right-handed alpha
Helix 5
AA5
B
107 121Right-handed alpha
Helix 6
AA6
B
136 156Right-handed alpha
Helix 7
AA7
B
156 161Right-handed alpha
Helix 8
AA8
B
166 194Right-handed alpha
Helix 9
AA9
B
200 214Right-handed alpha
Helix 10
AB1
B
216 233Right-handed alpha
Helix 11
AB2
B
247 260Right-handed alpha
Helix 12
AB3
B
263 280Right-handed alpha
Helix 13
AB4
B
307 324Right-handed alpha
Helix 14
AB5
B
331 336Right-handed alpha
Helix 15
AB6
B
338 351Right-handed alpha
Helix 16
AB7
B
392 419Right-handed alpha
Helix 17
AB8
B
422 436Right-handed alpha
Helix 18
AB9
B
442 450Right-handed alpha
Helix 19
AC1
B
451 455Right-handed 310
Helix 20
AC2
B
463 468Right-handed alpha
Helix 21
AC3
B
469 482Right-handed alpha
Helix 22
AC4
B
493 498Right-handed alpha
Helix 23
AC5
B
499 501Right-handed 310
Helix 24
AC6
B
503 507Right-handed 310
Helix 25
AC7
B
511 516Right-handed alpha
Helix 26
AC8
B
522 540Right-handed alpha
Helix 27
AC9
D
62 65Right-handed 310
Helix 28
AD1
D
74 76Right-handed 310
Helix 29
AD2
D
87 91Right-handed 310
Helix 30
AD3
D
101 105Right-handed 310
Helix 31
AD4
A
5 13Right-handed alpha
Helix 32
AD5
A
20 35Right-handed alpha
Helix 33
AD6
A
40 62Right-handed alpha
Helix 34
AD7
A
67 89Right-handed alpha
Helix 35
AD8
A
107 121Right-handed alpha
Helix 36
AD9
A
136 156Right-handed alpha
Helix 37
AE1
A
156 162Right-handed alpha
Helix 38
AE2
A
166 194Right-handed alpha
Helix 39
AE3
A
200 214Right-handed alpha
Helix 40
AE4
A
216 233Right-handed alpha
Helix 41
AE5
A
247 260Right-handed alpha
Helix 42
AE6
A
263 280Right-handed alpha
Helix 43
AE7
A
307 324Right-handed alpha
Helix 44
AE8
A
333 337Right-handed 310
Helix 45
AE9
A
338 350Right-handed alpha
Helix 46
AF1
A
354 358Right-handed 310
Helix 47
AF2
A
392 419Right-handed alpha
Helix 48
AF3
A
422 437Right-handed alpha
Helix 49
AF4
A
442 450Right-handed alpha
Helix 50
AF5
A
451 455Right-handed 310
Helix 51
AF6
A
463 468Right-handed alpha
Helix 52
AF7
A
469 482Right-handed alpha
Helix 53
AF8
A
493 498Right-handed alpha
Helix 54
AF9
A
499 501Right-handed 310
Helix 55
AG1
A
511 516Right-handed alpha
Helix 56
AG2
A
522 540Right-handed alpha
Helix 57
AG3
C
87 91Right-handed 310
Helix 58
AG4
C
101 105Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 7UBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
366 367anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 238first strand
Strand 2
B
125 130parallel
Strand 3
B
96 100parallel
Strand 4
B
281 284parallel
Strand 5
B
380 388anti-parallel
Strand 6
B
373 377anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
D
92 99parallel
Strand 3
D
121 125anti-parallel
Strand 4
D
11 12parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
D
92 99parallel
Strand 3
D
33 39anti-parallel
Strand 4
D
46 51anti-parallel
Strand 5
D
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 7first strand
Strand 2
D
18 23anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
366 367anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
125 130parallel
Strand 3
A
96 100parallel
Strand 4
A
281 284parallel
Strand 5
A
380 388anti-parallel
Strand 6
A
373 377anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
C
92 99parallel
Strand 3
C
121 125anti-parallel
Strand 4
C
10 12parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
C
92 99parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
46 51anti-parallel
Strand 5
C
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 7first strand
Strand 2
C
18 23anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
69 73anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il