Analysis of interatomic Contacts of Structural Units in PDB entry:
7UBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UBZ entry

There are 4 chains in PDB entry 7UBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 230
C
 MET 1LYS 230
B
 HIS 168ALA 472
D
 HIS 168ALA 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7UBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
10 22Right-handed alpha
Helix 3
AA3
A
24 33Right-handed alpha
Helix 4
AA4
A
41 45Right-handed 310
Helix 5
AA5
A
46 54Right-handed alpha
Helix 6
AA6
A
55 60Right-handed 310
Helix 7
AA7
A
61 74Right-handed alpha
Helix 8
AA8
A
82 86Right-handed 310
Helix 9
AA9
A
88 94Right-handed alpha
Helix 10
AB1
A
99 107Right-handed alpha
Helix 11
AB2
A
122 130Right-handed 310
Helix 12
AB3
A
133 142Right-handed alpha
Helix 13
AB4
A
155 163Right-handed alpha
Helix 14
AB5
A
165 175Right-handed alpha
Helix 15
AB6
A
188 200Right-handed alpha
Helix 16
AB7
A
204 220Right-handed alpha
Helix 17
AB8
C
4 8Right-handed 310
Helix 18
AB9
C
10 22Right-handed alpha
Helix 19
AC1
C
24 33Right-handed alpha
Helix 20
AC2
C
41 45Right-handed 310
Helix 21
AC3
C
46 54Right-handed alpha
Helix 22
AC4
C
56 60Right-handed 310
Helix 23
AC5
C
61 74Right-handed alpha
Helix 24
AC6
C
82 86Right-handed 310
Helix 25
AC7
C
88 95Right-handed alpha
Helix 26
AC8
C
99 107Right-handed alpha
Helix 27
AC9
C
122 130Right-handed 310
Helix 28
AD1
C
133 143Right-handed alpha
Helix 29
AD2
C
155 163Right-handed alpha
Helix 30
AD3
C
165 175Right-handed alpha
Helix 31
AD4
C
188 200Right-handed alpha
Helix 32
AD5
C
204 220Right-handed alpha
Helix 33
AD6
B
172 189Right-handed alpha
Helix 34
AD7
B
192 218Right-handed alpha
Helix 35
AD8
B
219 221Right-handed 310
Helix 36
AD9
B
241 247Right-handed alpha
Helix 37
AE1
B
252 256Right-handed 310
Helix 38
AE2
B
272 277Right-handed alpha
Helix 39
AE3
B
299 301Right-handed 310
Helix 40
AE4
B
302 311Right-handed alpha
Helix 41
AE5
B
316 329Right-handed alpha
Helix 42
AE6
B
447 471Right-handed alpha
Helix 43
AE7
D
172 189Right-handed alpha
Helix 44
AE8
D
192 219Right-handed alpha
Helix 45
AE9
D
241 247Right-handed alpha
Helix 46
AF1
D
252 256Right-handed 310
Helix 47
AF2
D
272 277Right-handed alpha
Helix 48
AF3
D
299 301Right-handed 310
Helix 49
AF4
D
302 311Right-handed alpha
Helix 50
AF5
D
317 329Right-handed alpha
Helix 51
AF6
D
344 352Right-handed alpha
Helix 52
AF7
D
447 471Right-handed alpha
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There are 2 sheets in PDB entry 7UBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 237first strand
Strand 2
B
266 271anti-parallel
Strand 3
B
283 286anti-parallel
Strand 4
B
336 338parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
235 237first strand
Strand 2
D
266 271anti-parallel
Strand 3
D
283 286anti-parallel
Strand 4
D
336 338parallel
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