Analysis of interatomic Contacts of Structural Units in PDB entry:
7UCF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UCF entry

There are 6 chains in PDB entry 7UCF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 518	ASP 664
D	GLN 1	CYS 226
E	ALA 3	CYS 204
G	GLU 32	GLY 507
H	VAL 2	CYS 235
L	VAL 8	CYS 218

There are 25 helices in PDB entry 7UCF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	529	534	Right-handed alpha
Helix 2	AA2	B	536	543	Right-handed alpha
Helix 3	AA3	B	570	596	Right-handed alpha
Helix 4	AA4	B	627	635	Right-handed alpha
Helix 5	AA5	B	638	649	Right-handed alpha
Helix 6	AA6	B	650	662	Right-handed alpha
Helix 7	AA7	D	28	32	Right-handed 310
Helix 8	AA8	D	87	91	Right-handed 310
Helix 9	AA9	D	166	168	Right-handed 310
Helix 10	AB1	D	197	199	Right-handed 310
Helix 11	AB2	D	211	214	Right-handed 310
Helix 12	AB3	E	75	79	Right-handed 310
Helix 13	AB4	E	114	119	Right-handed alpha
Helix 14	AB5	G	100	117	Right-handed alpha
Helix 15	AB6	G	122	127	Right-handed 310
Helix 16	AB7	G	195	198	Right-handed 310
Helix 17	AB8	G	334	354	Right-handed alpha
Helix 18	AB9	G	475	484	Right-handed alpha
Helix 19	AC1	H	61	64	Right-handed 310
Helix 20	AC2	H	86	90	Right-handed 310
Helix 21	AC3	H	175	177	Right-handed 310
Helix 22	AC4	H	204	208	Right-handed 310
Helix 23	AC5	L	82	86	Right-handed 310
Helix 24	AC6	L	128	134	Right-handed alpha
Helix 25	AC7	L	188	195	Right-handed alpha

There are 34 sheets in PDB entry 7UCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	G	494	499	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	72	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	117	121	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	35	39	anti-parallel
Strand 5	D	45	49	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	117	121	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	112	113	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	145	155	anti-parallel
Strand 3	D	185	195	anti-parallel
Strand 4	D	173	175	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	145	155	anti-parallel
Strand 3	D	185	195	anti-parallel
Strand 4	D	179	181	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	206	210	anti-parallel
Strand 3	D	215	219	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	10	first strand
Strand 2	E	94	96	parallel
Strand 3	E	80	86	anti-parallel
Strand 4	E	30	34	anti-parallel
Strand 5	E	42	45	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	10	first strand
Strand 2	E	94	96	parallel
Strand 3	E	80	86	anti-parallel
Strand 4	E	89	90	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	19	first strand
Strand 2	E	66	71	anti-parallel
Strand 3	E	22	23	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	19	first strand
Strand 2	E	66	71	anti-parallel
Strand 3	E	58	61	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	111	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	165	173	anti-parallel
Strand 4	E	152	154	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	111	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	165	173	anti-parallel
Strand 4	E	158	159	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	142	first strand
Strand 2	E	184	190	anti-parallel
Strand 3	E	193	194	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	142	first strand
Strand 2	E	184	190	anti-parallel
Strand 3	E	197	199	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	487	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	85	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	216	218	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	236	239	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	177	first strand
Strand 2	G	154	162	anti-parallel
Strand 3	G	129	133	anti-parallel
Strand 4	G	190	193	anti-parallel
Strand 5	G	181	183	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	203	first strand
Strand 2	G	433	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	260	first strand
Strand 2	G	441	456	anti-parallel
Strand 3	G	284	302	anti-parallel
Strand 4	G	329	333	anti-parallel
Strand 5	G	414	421	anti-parallel
Strand 6	G	381	385	anti-parallel
Strand 7	G	374	378	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	274	first strand
Strand 2	G	284	302	anti-parallel
Strand 3	G	441	456	anti-parallel
Strand 4	G	465	470	anti-parallel
Strand 5	G	358	361	parallel
Strand 6	G	394	395	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	308	first strand
Strand 2	G	316	320	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	126	130	parallel
Strand 3	H	91	104	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	126	130	parallel
Strand 3	H	91	104	anti-parallel
Strand 4	H	113	122	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	143	first strand
Strand 2	H	155	164	anti-parallel
Strand 3	H	195	203	anti-parallel
Strand 4	H	182	184	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	143	first strand
Strand 2	H	155	164	anti-parallel
Strand 3	H	195	203	anti-parallel
Strand 4	H	188	189	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	170	173	first strand
Strand 2	H	213	219	anti-parallel
Strand 3	H	224	230	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	14	first strand
Strand 2	L	107	113	parallel
Strand 3	L	88	95	anti-parallel
Strand 4	L	31	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	22	first strand
Strand 2	L	75	78	anti-parallel
Strand 3	L	62	64	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	125	first strand
Strand 2	L	137	146	anti-parallel
Strand 3	L	179	187	anti-parallel
Strand 4	L	166	168	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	121	125	first strand
Strand 2	L	137	146	anti-parallel
Strand 3	L	179	187	anti-parallel
Strand 4	L	172	173	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	160	161	first strand
Strand 2	L	152	157	anti-parallel
Strand 3	L	198	204	anti-parallel
Strand 4	L	207	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UCF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UCF