Analysis of interatomic Contacts of Structural Units in PDB entry:
7UD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UD0 entry

There are 2 chains in PDB entry 7UD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ASP 539
B
 ALA 2ASP 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 7UD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 27Right-handed alpha
Helix 2
AA2
A
29 33Right-handed 310
Helix 3
AA3
A
53 76Right-handed alpha
Helix 4
AA4
A
87 99Right-handed alpha
Helix 5
AA5
A
111 113Right-handed 310
Helix 6
AA6
A
114 128Right-handed alpha
Helix 7
AA7
A
142 150Right-handed alpha
Helix 8
AA8
A
157 169Right-handed alpha
Helix 9
AA9
A
189 196Right-handed alpha
Helix 10
AB1
A
204 209Right-handed 310
Helix 11
AB2
A
226 248Right-handed alpha
Helix 12
AB3
A
266 272Right-handed alpha
Helix 13
AB4
A
276 288Right-handed alpha
Helix 14
AB5
A
305 322Right-handed alpha
Helix 15
AB6
A
346 355Right-handed alpha
Helix 16
AB7
A
360 373Right-handed alpha
Helix 17
AB8
A
377 389Right-handed alpha
Helix 18
AB9
A
396 408Right-handed alpha
Helix 19
AC1
A
412 425Right-handed alpha
Helix 20
AC2
A
429 433Right-handed 310
Helix 21
AC3
A
434 439Right-handed alpha
Helix 22
AC4
A
439 448Right-handed alpha
Helix 23
AC5
A
451 458Right-handed alpha
Helix 24
AC6
A
459 462Right-handed 310
Helix 25
AC7
A
465 470Right-handed alpha
Helix 26
AC8
A
471 475Right-handed 310
Helix 27
AC9
A
476 483Right-handed alpha
Helix 28
AD1
A
497 517Right-handed alpha
Helix 29
AD2
A
527 535Right-handed alpha
Helix 30
AD3
B
20 27Right-handed alpha
Helix 31
AD4
B
29 33Right-handed 310
Helix 32
AD5
B
53 76Right-handed alpha
Helix 33
AD6
B
87 99Right-handed alpha
Helix 34
AD7
B
111 113Right-handed 310
Helix 35
AD8
B
114 128Right-handed alpha
Helix 36
AD9
B
142 150Right-handed alpha
Helix 37
AE1
B
157 169Right-handed alpha
Helix 38
AE2
B
189 196Right-handed alpha
Helix 39
AE3
B
204 209Right-handed 310
Helix 40
AE4
B
226 248Right-handed alpha
Helix 41
AE5
B
266 272Right-handed alpha
Helix 42
AE6
B
276 288Right-handed alpha
Helix 43
AE7
B
305 322Right-handed alpha
Helix 44
AE8
B
346 355Right-handed alpha
Helix 45
AE9
B
360 373Right-handed alpha
Helix 46
AF1
B
377 389Right-handed alpha
Helix 47
AF2
B
396 408Right-handed alpha
Helix 48
AF3
B
412 425Right-handed alpha
Helix 49
AF4
B
429 433Right-handed 310
Helix 50
AF5
B
434 439Right-handed alpha
Helix 51
AF6
B
439 448Right-handed alpha
Helix 52
AF7
B
451 458Right-handed alpha
Helix 53
AF8
B
459 462Right-handed 310
Helix 54
AF9
B
465 470Right-handed alpha
Helix 55
AG1
B
471 475Right-handed 310
Helix 56
AG2
B
476 483Right-handed alpha
Helix 57
AG3
B
497 517Right-handed alpha
Helix 58
AG4
B
527 535Right-handed alpha
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There are 4 sheets in PDB entry 7UD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
35 42parallel
Strand 3
A
6 11parallel
Strand 4
A
101 107parallel
Strand 5
A
131 135parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
300 301anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
35 42parallel
Strand 3
B
6 11parallel
Strand 4
B
101 107parallel
Strand 5
B
131 135parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 297first strand
Strand 2
B
300 301anti-parallel
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