Analysis of interatomic Contacts of Structural Units in PDB entry:
7UD5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UD5 entry

There are 21 chains in PDB entry 7UD5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	VAL 89
A	ALA 91	ILE 119
A	PRO 121	ARG 134
B	LYS 20	GLY 101
C	LYS 15	THR 120
D	ARG 26	ALA 121
E	ARG 40	VAL 89
E	ALA 91	ILE 119
E	PRO 121	ARG 134
F	ARG 23	GLY 101
G	LYS 13	PRO 117
H	LYS 28	LYS 122
I	T 2	T 147
J	A 151	A 296
K	ALA 3764	ASN 3969
L	LYS 32	CYS 334
M	GLY 201	ARG 528
N	GLN 11	ILE 404
O	MET 1	GLY 75
P	LYS 45	GLU 96
Q	VAL 46	GLU 96

There are 52 helices in PDB entry 7UD5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	56	Right-handed alpha
Helix 2	AA2	A	64	75	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	50	76	Right-handed alpha
Helix 8	AA8	B	83	94	Right-handed alpha
Helix 9	AA9	C	17	21	Right-handed 310
Helix 10	AB1	C	27	36	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	88	99	Right-handed alpha
Helix 17	AB8	D	101	120	Right-handed alpha
Helix 18	AB9	E	44	57	Right-handed alpha
Helix 19	AC1	E	63	79	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	132	Right-handed alpha
Helix 22	AC4	F	25	29	Right-handed 310
Helix 23	AC5	F	30	42	Right-handed alpha
Helix 24	AC6	F	50	76	Right-handed alpha
Helix 25	AC7	F	83	94	Right-handed alpha
Helix 26	AC8	G	16	21	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	45	73	Right-handed alpha
Helix 29	AD2	G	79	90	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	35	46	Right-handed alpha
Helix 32	AD5	H	52	81	Right-handed alpha
Helix 33	AD6	H	87	99	Right-handed alpha
Helix 34	AD7	H	100	121	Right-handed alpha
Helix 35	AD8	K	3816	3818	Right-handed 310
Helix 36	AD9	K	3819	3825	Right-handed alpha
Helix 37	AE1	K	3867	3879	Right-handed alpha
Helix 38	AE2	K	3901	3905	Right-handed 310
Helix 39	AE3	M	202	211	Right-handed alpha
Helix 40	AE4	M	434	439	Right-handed 310
Helix 41	AE5	M	504	526	Right-handed alpha
Helix 42	AE6	N	229	234	Right-handed alpha
Helix 43	AE7	N	328	332	Right-handed 310
Helix 44	AE8	O	22	35	Right-handed alpha
Helix 45	AE9	O	37	41	Right-handed 310
Helix 46	AF1	O	55	60	Right-handed alpha
Helix 47	AF2	P	52	60	Right-handed alpha
Helix 48	AF3	P	61	75	Right-handed alpha
Helix 49	AF4	P	80	90	Right-handed alpha
Helix 50	AF5	Q	52	60	Right-handed alpha
Helix 51	AF6	Q	64	74	Right-handed alpha
Helix 52	AF7	Q	79	91	Right-handed alpha

There are 31 sheets in PDB entry 7UD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3831	3835	first strand
Strand 2	K	3841	3845	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3854	3857	first strand
Strand 2	K	3923	3930	anti-parallel
Strand 3	K	3913	3914	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3854	3857	first strand
Strand 2	K	3923	3930	anti-parallel
Strand 3	K	3917	3920	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3860	3864	first strand
Strand 2	K	3891	3899	anti-parallel
Strand 3	K	3885	3886	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	36	37	first strand
Strand 2	L	328	331	anti-parallel
Strand 3	L	316	320	anti-parallel
Strand 4	L	304	309	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	50	first strand
Strand 2	L	60	64	anti-parallel
Strand 3	L	69	72	anti-parallel
Strand 4	L	81	83	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	90	95	first strand
Strand 2	L	102	106	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	112	114	first strand
Strand 2	L	121	124	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	132	137	first strand
Strand 2	L	144	148	anti-parallel
Strand 3	L	153	156	anti-parallel
Strand 4	L	163	167	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	174	179	first strand
Strand 2	L	185	190	anti-parallel
Strand 3	L	195	199	anti-parallel
Strand 4	L	205	209	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	228	231	first strand
Strand 2	L	239	242	anti-parallel
Strand 3	L	247	248	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	264	267	first strand
Strand 2	L	273	276	anti-parallel
Strand 3	L	283	286	anti-parallel
Strand 4	L	295	297	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	247	250	first strand
Strand 2	M	426	429	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	299	300	first strand
Strand 2	M	307	308	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	314	316	first strand
Strand 2	M	469	474	anti-parallel
Strand 3	M	344	347	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	391	394	first strand
Strand 2	M	329	332	anti-parallel
Strand 3	M	481	483	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	373	375	first strand
Strand 2	M	378	380	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	450	451	first strand
Strand 2	M	454	455	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	16	18	first strand
Strand 2	N	317	322	anti-parallel
Strand 3	N	310	314	anti-parallel
Strand 4	N	298	301	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	38	42	first strand
Strand 2	N	47	52	anti-parallel
Strand 3	N	57	63	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	73	74	first strand
Strand 2	N	80	82	anti-parallel
Strand 3	N	90	94	anti-parallel
Strand 4	N	100	104	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	116	first strand
Strand 2	N	119	124	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	133	136	first strand
Strand 2	N	141	144	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	159	first strand
Strand 2	N	165	169	anti-parallel
Strand 3	N	174	179	anti-parallel
Strand 4	N	187	190	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	201	206	first strand
Strand 2	N	212	217	anti-parallel
Strand 3	N	222	226	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	265	268	first strand
Strand 2	N	277	280	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	12	15	first strand
Strand 2	O	3	6	anti-parallel
Strand 3	O	66	68	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UD5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UD5