Analysis of interatomic Contacts of Structural Units in PDB entry:
7UD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UD6 entry

There is 1 chain in PDB entry 7UD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7UD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 52Right-handed 310
Helix 2
AA2
A
66 79Right-handed alpha
Helix 3
AA3
A
83 98Right-handed alpha
Helix 4
AA4
A
105 120Right-handed alpha
Helix 5
AA5
A
132 140Right-handed alpha
Helix 6
AA6
A
154 169Right-handed alpha
Helix 7
AA7
A
170 172Right-handed 310
Helix 8
AA8
A
180 185Right-handed alpha
Helix 9
AA9
A
186 192Right-handed alpha
Helix 10
AB1
A
205 209Right-handed 310
Helix 11
AB2
A
210 219Right-handed alpha
Helix 12
AB3
A
240 248Right-handed alpha
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There are 2 sheets in PDB entry 7UD6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
24 30anti-parallel
Strand 4
A
2 5anti-parallel
Strand 5
A
54 56anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
147 152parallel
Strand 3
A
123 127parallel
Strand 4
A
197 202parallel
Strand 5
A
222 233parallel
Strand 6
A
268 274anti-parallel
Strand 7
A
251 257anti-parallel
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