Analysis of interatomic Contacts of Structural Units in PDB entry:
7UDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UDB entry

There are 3 chains in PDB entry 7UDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ILE 592
B
 LYS 2ARG 246
C
 GLN 33SER 80
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7UDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 20Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
46 52Right-handed alpha
Helix 4
AA4
A
80 91Right-handed alpha
Helix 5
AA5
A
92 97Right-handed 310
Helix 6
AA6
A
111 121Right-handed alpha
Helix 7
AA7
A
122 126Right-handed alpha
Helix 8
AA8
A
151 157Right-handed alpha
Helix 9
AA9
A
158 162Right-handed 310
Helix 10
AB1
A
164 184Right-handed alpha
Helix 11
AB2
A
196 216Right-handed alpha
Helix 12
AB3
A
240 244Right-handed 310
Helix 13
AB4
A
248 257Right-handed alpha
Helix 14
AB5
A
285 291Right-handed alpha
Helix 15
AB6
A
295 314Right-handed alpha
Helix 16
AB7
A
327 359Right-handed alpha
Helix 17
AB8
A
361 375Right-handed alpha
Helix 18
AB9
A
385 395Right-handed alpha
Helix 19
AC1
A
400 415Right-handed alpha
Helix 20
AC2
A
419 431Right-handed alpha
Helix 21
AC3
A
434 436Right-handed 310
Helix 22
AC4
A
437 443Right-handed alpha
Helix 23
AC5
A
444 447Right-handed 310
Helix 24
AC6
A
480 491Right-handed alpha
Helix 25
AC7
A
547 561Right-handed alpha
Helix 26
AC8
A
574 584Right-handed alpha
Helix 27
AC9
B
4 12Right-handed alpha
Helix 28
AD1
B
30 64Right-handed alpha
Helix 29
AD2
B
68 105Right-handed alpha
Helix 30
AD3
B
109 149Right-handed alpha
Helix 31
AD4
B
163 169Right-handed alpha
Helix 32
AD5
B
178 196Right-handed alpha
Helix 33
AD6
B
204 223Right-handed alpha
Helix 34
AD7
B
232 239Right-handed alpha
Helix 35
AD8
C
33 37Right-handed 310
Helix 36
AD9
C
38 74Right-handed alpha
Helix 37
AE1
C
75 77Right-handed 310
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There are 4 sheets in PDB entry 7UDB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
29 33parallel
Strand 3
A
72 77parallel
Strand 4
A
102 106parallel
Strand 5
A
127 132parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
564 569parallel
Strand 4
A
536 542parallel
Strand 5
A
229 234parallel
Strand 6
A
188 191parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 266first strand
Strand 2
A
277 280anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
572 573parallel
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