Analysis of interatomic Contacts of Structural Units in PDB entry:
7UDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UDQ entry

There are 2 chains in PDB entry 7UDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 261GLN 646
B
 ALA 258THR 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7UDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
262 269Right-handed alpha
Helix 2
AA2
A
270 282Right-handed alpha
Helix 3
AA3
A
291 302Right-handed alpha
Helix 4
AA4
A
308 321Right-handed alpha
Helix 5
AA5
A
323 326Right-handed 310
Helix 6
AA6
A
363 366Right-handed 310
Helix 7
AA7
A
367 382Right-handed alpha
Helix 8
AA8
A
392 405Right-handed alpha
Helix 9
AA9
A
407 422Right-handed alpha
Helix 10
AB1
A
434 438Right-handed 310
Helix 11
AB2
A
454 456Right-handed 310
Helix 12
AB3
A
460 481Right-handed alpha
Helix 13
AB4
A
490 492Right-handed 310
Helix 14
AB5
A
515 531Right-handed alpha
Helix 15
AB6
A
533 544Right-handed alpha
Helix 16
AB7
A
552 571Right-handed alpha
Helix 17
AB8
A
578 582Right-handed alpha
Helix 18
AB9
A
583 588Right-handed alpha
Helix 19
AC1
A
589 591Right-handed 310
Helix 20
AC2
A
603 606Right-handed 310
Helix 21
AC3
A
607 623Right-handed alpha
Helix 22
AC4
A
629 645Right-handed alpha
Helix 23
AC5
B
259 268Right-handed alpha
Helix 24
AC6
B
270 282Right-handed alpha
Helix 25
AC7
B
291 303Right-handed alpha
Helix 26
AC8
B
308 321Right-handed alpha
Helix 27
AC9
B
323 326Right-handed 310
Helix 28
AD1
B
364 366Right-handed 310
Helix 29
AD2
B
367 382Right-handed alpha
Helix 30
AD3
B
392 406Right-handed alpha
Helix 31
AD4
B
407 422Right-handed alpha
Helix 32
AD5
B
434 438Right-handed 310
Helix 33
AD6
B
454 456Right-handed 310
Helix 34
AD7
B
460 481Right-handed alpha
Helix 35
AD8
B
490 492Right-handed 310
Helix 36
AD9
B
515 531Right-handed alpha
Helix 37
AE1
B
533 544Right-handed alpha
Helix 38
AE2
B
552 572Right-handed alpha
Helix 39
AE3
B
580 589Right-handed alpha
Helix 40
AE4
B
591 596Right-handed alpha
Helix 41
AE5
B
607 623Right-handed alpha
Helix 42
AE6
B
629 642Right-handed alpha
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There are 10 sheets in PDB entry 7UDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
342 349anti-parallel
Strand 3
A
337 338anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
342 349anti-parallel
Strand 3
A
354 360anti-parallel
Strand 4
A
442 446anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
502 505parallel
Strand 3
A
494 497anti-parallel
Strand 4
A
451 452anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
511 513anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 577first strand
Strand 2
A
626 627anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 331first strand
Strand 2
B
342 349anti-parallel
Strand 3
B
337 338anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 331first strand
Strand 2
B
342 349anti-parallel
Strand 3
B
354 360anti-parallel
Strand 4
B
442 446anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 429first strand
Strand 2
B
502 505parallel
Strand 3
B
494 497anti-parallel
Strand 4
B
451 452anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 486first strand
Strand 2
B
511 513anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
576 577first strand
Strand 2
B
626 627anti-parallel
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