Analysis of interatomic Contacts of Structural Units in PDB entry:
7UDS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UDS entry

There are 12 chains in PDB entry 7UDS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 3	LYS 222
F	GLN 3	LYS 222
L	ILE 1	GLY 209
H	GLN 3	LYS 222
G	ILE 1	GLY 209
E	ILE 1	GLY 209
A	GLU 66	LEU 244
C	GLU 66	LEU 244
B	GLU 66	LEU 244
a	GLY 276	LEU 414
c	GLY 276	LEU 414
b	GLY 276	LEU 414

There are 56 helices in PDB entry 7UDS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	28	32	Right-handed 310
Helix 2	AA2	D	62	65	Right-handed 310
Helix 3	AA3	D	194	200	Right-handed alpha
Helix 4	AA4	F	28	32	Right-handed 310
Helix 5	AA5	F	62	65	Right-handed 310
Helix 6	AA6	F	194	200	Right-handed alpha
Helix 7	AA7	L	78	82	Right-handed 310
Helix 8	AA8	L	118	125	Right-handed alpha
Helix 9	AA9	L	179	185	Right-handed alpha
Helix 10	AB1	H	28	32	Right-handed 310
Helix 11	AB2	H	62	65	Right-handed 310
Helix 12	AB3	H	194	200	Right-handed alpha
Helix 13	AB4	G	78	82	Right-handed 310
Helix 14	AB5	G	118	125	Right-handed alpha
Helix 15	AB6	G	179	185	Right-handed alpha
Helix 16	AB7	E	78	82	Right-handed 310
Helix 17	AB8	E	118	125	Right-handed alpha
Helix 18	AB9	E	179	185	Right-handed alpha
Helix 19	AC1	A	73	78	Right-handed 310
Helix 20	AC2	A	119	126	Right-handed alpha
Helix 21	AC3	A	129	142	Right-handed alpha
Helix 22	AC4	A	156	160	Right-handed 310
Helix 23	AC5	A	183	194	Right-handed alpha
Helix 24	AC6	A	237	244	Right-handed alpha
Helix 25	AC7	C	73	78	Right-handed 310
Helix 26	AC8	C	119	126	Right-handed alpha
Helix 27	AC9	C	129	142	Right-handed alpha
Helix 28	AD1	C	156	160	Right-handed 310
Helix 29	AD2	C	183	194	Right-handed alpha
Helix 30	AD3	C	237	244	Right-handed alpha
Helix 31	AD4	B	73	78	Right-handed 310
Helix 32	AD5	B	119	126	Right-handed alpha
Helix 33	AD6	B	129	142	Right-handed alpha
Helix 34	AD7	B	156	160	Right-handed 310
Helix 35	AD8	B	183	194	Right-handed alpha
Helix 36	AD9	B	237	244	Right-handed alpha
Helix 37	AE1	a	293	298	Right-handed alpha
Helix 38	AE2	a	299	302	Right-handed 310
Helix 39	AE3	a	308	324	Right-handed alpha
Helix 40	AE4	a	332	344	Right-handed alpha
Helix 41	AE5	a	345	358	Right-handed alpha
Helix 42	AE6	a	395	397	Right-handed 310
Helix 43	AE7	a	398	414	Right-handed alpha
Helix 44	AE8	c	293	298	Right-handed alpha
Helix 45	AE9	c	299	302	Right-handed 310
Helix 46	AF1	c	308	325	Right-handed alpha
Helix 47	AF2	c	333	344	Right-handed alpha
Helix 48	AF3	c	345	357	Right-handed alpha
Helix 49	AF4	c	394	397	Right-handed 310
Helix 50	AF5	c	398	414	Right-handed alpha
Helix 51	AF6	b	293	298	Right-handed alpha
Helix 52	AF7	b	299	302	Right-handed 310
Helix 53	AF8	b	308	324	Right-handed alpha
Helix 54	AF9	b	332	344	Right-handed alpha
Helix 55	AG1	b	345	358	Right-handed alpha
Helix 56	AG2	b	398	414	Right-handed alpha

There are 40 sheets in PDB entry 7UDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	106	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	143	151	anti-parallel
Strand 3	D	184	193	anti-parallel
Strand 4	D	171	173	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	143	151	anti-parallel
Strand 3	D	184	193	anti-parallel
Strand 4	D	177	178	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	203	208	anti-parallel
Strand 3	D	213	218	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	17	24	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	115	119	parallel
Strand 3	F	92	101	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	115	119	parallel
Strand 3	F	92	101	anti-parallel
Strand 4	F	106	108	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	132	first strand
Strand 2	F	143	153	anti-parallel
Strand 3	F	184	193	anti-parallel
Strand 4	F	171	173	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	162	first strand
Strand 2	F	203	208	anti-parallel
Strand 3	F	213	218	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	6	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	69	74	anti-parallel
Strand 4	L	61	66	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	11	first strand
Strand 2	L	99	102	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	32	37	anti-parallel
Strand 5	L	44	48	anti-parallel
Strand 6	L	52	53	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	111	115	first strand
Strand 2	L	127	134	anti-parallel
Strand 3	L	171	178	anti-parallel
Strand 4	L	157	160	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	141	147	first strand
Strand 2	L	188	195	anti-parallel
Strand 3	L	202	207	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	17	24	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	106	111	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	177	178	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	203	208	anti-parallel
Strand 3	H	213	218	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	69	74	anti-parallel
Strand 4	G	62	66	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	11	first strand
Strand 2	G	99	102	parallel
Strand 3	G	84	89	anti-parallel
Strand 4	G	32	37	anti-parallel
Strand 5	G	44	48	anti-parallel
Strand 6	G	52	53	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	111	115	first strand
Strand 2	G	127	134	anti-parallel
Strand 3	G	171	178	anti-parallel
Strand 4	G	157	160	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	147	first strand
Strand 2	G	188	195	anti-parallel
Strand 3	G	202	207	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	69	74	anti-parallel
Strand 4	E	62	66	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	99	102	parallel
Strand 3	E	84	88	anti-parallel
Strand 4	E	33	37	anti-parallel
Strand 5	E	44	47	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	115	first strand
Strand 2	E	127	134	anti-parallel
Strand 3	E	171	178	anti-parallel
Strand 4	E	157	160	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	147	first strand
Strand 2	E	188	195	anti-parallel
Strand 3	E	202	207	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	a	367	371	anti-parallel
Strand 3	a	383	384	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	218	224	anti-parallel
Strand 5	A	162	166	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	c	367	371	anti-parallel
Strand 3	c	383	384	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	88	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	100	107	anti-parallel
Strand 4	C	218	224	anti-parallel
Strand 5	C	162	166	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	b	367	371	anti-parallel
Strand 3	b	383	384	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	88	first strand
Strand 2	B	91	96	anti-parallel
Strand 3	B	100	107	anti-parallel
Strand 4	B	218	225	anti-parallel
Strand 5	B	162	166	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	387	388	first strand
Strand 2	a	391	392	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	278	279	first strand
Strand 2	c	290	291	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	387	388	first strand
Strand 2	c	391	392	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	278	279	first strand
Strand 2	b	290	291	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	387	388	first strand
Strand 2	b	391	392	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UDS

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UDS