Analysis of interatomic Contacts of Structural Units in PDB entry:
7UDU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UDU entry

There are 8 chains in PDB entry 7UDU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	GLU 72
A	GLY 74	PHE 375
B	ASP 3	GLU 72
B	GLY 74	PHE 375
C	ASP 3	GLU 72
C	GLY 74	PHE 375
D	GLU 1205	PHE 1923
E	VAL 22	ALA 167

There are 99 helices in PDB entry 7UDU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	145	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	194	Right-handed alpha
Helix 8	AA8	A	195	197	Right-handed 310
Helix 9	AA9	A	202	217	Right-handed alpha
Helix 10	AB1	A	222	231	Right-handed alpha
Helix 11	AB2	A	252	257	Right-handed alpha
Helix 12	AB3	A	258	262	Right-handed 310
Helix 13	AB4	A	273	283	Right-handed alpha
Helix 14	AB5	A	286	296	Right-handed alpha
Helix 15	AB6	A	301	305	Right-handed 310
Helix 16	AB7	A	308	321	Right-handed alpha
Helix 17	AB8	A	337	349	Right-handed alpha
Helix 18	AB9	A	350	356	Right-handed 310
Helix 19	AC1	A	359	366	Right-handed alpha
Helix 20	AC2	A	367	372	Right-handed 310
Helix 21	AC3	B	54	61	Right-handed alpha
Helix 22	AC4	B	78	92	Right-handed alpha
Helix 23	AC5	B	97	101	Right-handed 310
Helix 24	AC6	B	112	126	Right-handed alpha
Helix 25	AC7	B	137	145	Right-handed alpha
Helix 26	AC8	B	172	175	Right-handed 310
Helix 27	AC9	B	181	194	Right-handed alpha
Helix 28	AD1	B	195	197	Right-handed 310
Helix 29	AD2	B	202	217	Right-handed alpha
Helix 30	AD3	B	222	231	Right-handed alpha
Helix 31	AD4	B	252	257	Right-handed alpha
Helix 32	AD5	B	258	262	Right-handed 310
Helix 33	AD6	B	273	283	Right-handed alpha
Helix 34	AD7	B	286	296	Right-handed alpha
Helix 35	AD8	B	301	305	Right-handed 310
Helix 36	AD9	B	308	321	Right-handed alpha
Helix 37	AE1	B	337	349	Right-handed alpha
Helix 38	AE2	B	350	356	Right-handed 310
Helix 39	AE3	B	359	366	Right-handed alpha
Helix 40	AE4	B	367	372	Right-handed 310
Helix 41	AE5	C	54	61	Right-handed alpha
Helix 42	AE6	C	78	92	Right-handed alpha
Helix 43	AE7	C	97	101	Right-handed 310
Helix 44	AE8	C	112	126	Right-handed alpha
Helix 45	AE9	C	137	145	Right-handed alpha
Helix 46	AF1	C	172	175	Right-handed 310
Helix 47	AF2	C	181	194	Right-handed alpha
Helix 48	AF3	C	195	197	Right-handed 310
Helix 49	AF4	C	202	217	Right-handed alpha
Helix 50	AF5	C	222	231	Right-handed alpha
Helix 51	AF6	C	252	257	Right-handed alpha
Helix 52	AF7	C	258	262	Right-handed 310
Helix 53	AF8	C	273	283	Right-handed alpha
Helix 54	AF9	C	286	296	Right-handed alpha
Helix 55	AG1	C	301	305	Right-handed 310
Helix 56	AG2	C	308	321	Right-handed alpha
Helix 57	AG3	C	337	349	Right-handed alpha
Helix 58	AG4	C	350	356	Right-handed 310
Helix 59	AG5	C	359	366	Right-handed alpha
Helix 60	AG6	C	367	372	Right-handed 310
Helix 61	AG7	D	1210	1214	Right-handed 310
Helix 62	AG8	D	1218	1232	Right-handed alpha
Helix 63	AG9	D	1257	1263	Right-handed alpha
Helix 64	AH1	D	1264	1268	Right-handed 310
Helix 65	AH2	D	1276	1290	Right-handed alpha
Helix 66	AH3	D	1304	1318	Right-handed alpha
Helix 67	AH4	D	1331	1333	Right-handed 310
Helix 68	AH5	D	1334	1342	Right-handed alpha
Helix 69	AH6	D	1379	1383	Right-handed 310
Helix 70	AH7	D	1393	1402	Right-handed alpha
Helix 71	AH8	D	1404	1411	Right-handed alpha
Helix 72	AH9	D	1419	1424	Right-handed alpha
Helix 73	AI1	D	1435	1449	Right-handed alpha
Helix 74	AI2	D	1452	1471	Right-handed alpha
Helix 75	AI3	D	1489	1499	Right-handed alpha
Helix 76	AI4	D	1503	1512	Right-handed alpha
Helix 77	AI5	D	1528	1559	Right-handed alpha
Helix 78	AI6	D	1583	1616	Right-handed alpha
Helix 79	AI7	D	1617	1620	Right-handed 310
Helix 80	AI8	D	1627	1636	Right-handed alpha
Helix 81	AI9	D	1640	1651	Right-handed alpha
Helix 82	AJ1	D	1655	1667	Right-handed alpha
Helix 83	AJ2	D	1699	1703	Right-handed 310
Helix 84	AJ3	D	1708	1717	Right-handed alpha
Helix 85	AJ4	D	1720	1734	Right-handed alpha
Helix 86	AJ5	D	1753	1772	Right-handed alpha
Helix 87	AJ6	D	1792	1804	Right-handed alpha
Helix 88	AJ7	D	1806	1813	Right-handed alpha
Helix 89	AJ8	D	1822	1829	Right-handed alpha
Helix 90	AJ9	D	1846	1855	Right-handed alpha
Helix 91	AK1	D	1871	1910	Right-handed alpha
Helix 92	AK2	D	1913	1922	Right-handed alpha
Helix 93	AK3	E	27	42	Right-handed alpha
Helix 94	AK4	E	50	60	Right-handed alpha
Helix 95	AK5	E	82	93	Right-handed alpha
Helix 96	AK6	E	99	109	Right-handed alpha
Helix 97	AK7	E	120	130	Right-handed alpha
Helix 98	AK8	E	135	146	Right-handed alpha
Helix 99	AK9	E	156	166	Right-handed alpha

There are 24 sheets in PDB entry 7UDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	65	68	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	B	169	170	anti-parallel
Strand 3	B	160	166	anti-parallel
Strand 4	B	176	178	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	B	169	170	anti-parallel
Strand 3	B	160	166	anti-parallel
Strand 4	B	149	155	anti-parallel
Strand 5	B	297	300	parallel
Strand 6	B	329	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	149	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	65	68	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	149	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1237	1239	first strand
Strand 2	D	1242	1246	anti-parallel
Strand 3	D	1777	1780	parallel
Strand 4	D	1293	1299	parallel
Strand 5	D	1566	1572	parallel
Strand 6	D	1358	1364	anti-parallel
Strand 7	D	1367	1374	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1237	1239	first strand
Strand 2	D	1242	1246	anti-parallel
Strand 3	D	1777	1780	parallel
Strand 4	D	1293	1299	parallel
Strand 5	D	1773	1774	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1343	1346	first strand
Strand 2	D	1349	1353	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1513	1517	first strand
Strand 2	D	1522	1526	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1673	1674	first strand
Strand 2	D	1682	1687	anti-parallel
Strand 3	D	1690	1695	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	E	153	154	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UDU

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UDU