Analysis of interatomic Contacts of Structural Units in PDB entry:
7UED

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UED entry

There are 3 chains in PDB entry 7UED (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	LYS 299	GLY 585
L	ASP 2	GLU 213
H	VAL 2	VAL 156

There are 35 helices in PDB entry 7UED. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	312	318	Right-handed 310
Helix 2	AA2	M	319	327	Right-handed alpha
Helix 3	AA3	M	328	335	Right-handed alpha
Helix 4	AA4	M	336	342	Right-handed 310
Helix 5	AA5	M	345	360	Right-handed alpha
Helix 6	AA6	M	365	370	Right-handed alpha
Helix 7	AA7	M	372	379	Right-handed 310
Helix 8	AA8	M	380	385	Right-handed alpha
Helix 9	AA9	M	391	400	Right-handed alpha
Helix 10	AB1	M	408	423	Right-handed alpha
Helix 11	AB2	M	426	437	Right-handed alpha
Helix 12	AB3	M	440	444	Right-handed 310
Helix 13	AB4	M	447	452	Right-handed 310
Helix 14	AB5	M	453	460	Right-handed 310
Helix 15	AB6	M	461	466	Right-handed 310
Helix 16	AB7	M	469	485	Right-handed alpha
Helix 17	AB8	M	489	497	Right-handed alpha
Helix 18	AB9	M	499	503	Right-handed 310
Helix 19	AC1	M	504	513	Right-handed alpha
Helix 20	AC2	M	519	524	Right-handed alpha
Helix 21	AC3	M	527	532	Right-handed alpha
Helix 22	AC4	M	535	544	Right-handed alpha
Helix 23	AC5	M	545	551	Right-handed 310
Helix 24	AC6	M	556	564	Right-handed alpha
Helix 25	AC7	M	567	572	Right-handed alpha
Helix 26	AC8	M	573	575	Right-handed 310
Helix 27	AC9	L	79	83	Right-handed 310
Helix 28	AD1	L	121	128	Right-handed alpha
Helix 29	AD2	L	183	188	Right-handed alpha
Helix 30	AD3	H	62	65	Right-handed 310
Helix 31	AD4	H	87	91	Right-handed 310
Helix 32	AD5	H	133	137	Right-handed 310
Helix 33	AD6	H	162	164	Right-handed 310
Helix 34	AD7	H	193	195	Right-handed 310
Helix 35	AD8	H	207	210	Right-handed 310

There are 11 sheets in PDB entry 7UED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	144	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	106	109	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	141	151	anti-parallel
Strand 3	H	182	191	anti-parallel
Strand 4	H	169	171	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	141	151	anti-parallel
Strand 3	H	182	191	anti-parallel
Strand 4	H	175	176	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	160	first strand
Strand 2	H	200	206	anti-parallel
Strand 3	H	211	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UED

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UED