Analysis of interatomic Contacts of Structural Units in PDB entry:
7UFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UFF entry

There are 2 chains in PDB entry 7UFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29ARG 496
B
 SER 29ARG 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 7UFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 36Right-handed alpha
Helix 2
AA2
A
49 54Right-handed 310
Helix 3
AA3
A
55 69Right-handed alpha
Helix 4
AA4
A
86 95Right-handed alpha
Helix 5
AA5
A
111 117Right-handed 310
Helix 6
AA6
A
122 134Right-handed alpha
Helix 7
AA7
A
135 137Right-handed 310
Helix 8
AA8
A
138 145Right-handed alpha
Helix 9
AA9
A
145 165Right-handed alpha
Helix 10
AB1
A
172 190Right-handed alpha
Helix 11
AB2
A
201 209Right-handed alpha
Helix 12
AB3
A
217 226Right-handed alpha
Helix 13
AB4
A
229 236Right-handed alpha
Helix 14
AB5
A
242 256Right-handed alpha
Helix 15
AB6
A
272 280Right-handed alpha
Helix 16
AB7
A
293 324Right-handed alpha
Helix 17
AB8
A
324 339Right-handed alpha
Helix 18
AB9
A
346 353Right-handed alpha
Helix 19
AC1
A
353 367Right-handed alpha
Helix 20
AC2
A
398 403Right-handed alpha
Helix 21
AC3
A
415 420Right-handed 310
Helix 22
AC4
A
423 427Right-handed 310
Helix 23
AC5
A
444 461Right-handed alpha
Helix 24
AC6
B
31 37Right-handed alpha
Helix 25
AC7
B
49 55Right-handed 310
Helix 26
AC8
B
56 69Right-handed alpha
Helix 27
AC9
B
86 95Right-handed alpha
Helix 28
AD1
B
112 117Right-handed 310
Helix 29
AD2
B
122 134Right-handed alpha
Helix 30
AD3
B
135 137Right-handed 310
Helix 31
AD4
B
138 166Right-handed alpha
Helix 32
AD5
B
172 188Right-handed alpha
Helix 33
AD6
B
201 209Right-handed alpha
Helix 34
AD7
B
219 224Right-handed alpha
Helix 35
AD8
B
226 228Right-handed 310
Helix 36
AD9
B
229 235Right-handed alpha
Helix 37
AE1
B
242 257Right-handed alpha
Helix 38
AE2
B
270 280Right-handed alpha
Helix 39
AE3
B
293 324Right-handed alpha
Helix 40
AE4
B
324 339Right-handed alpha
Helix 41
AE5
B
340 343Right-handed 310
Helix 42
AE6
B
346 353Right-handed alpha
Helix 43
AE7
B
353 367Right-handed alpha
Helix 44
AE8
B
397 403Right-handed alpha
Helix 45
AE9
B
415 420Right-handed 310
Helix 46
AF1
B
423 427Right-handed 310
Helix 47
AF2
B
444 461Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7UFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 76first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
393 397parallel
Strand 4
A
372 376anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
490 495anti-parallel
Strand 3
A
463 466anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
387 388anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 76first strand
Strand 2
B
79 84anti-parallel
Strand 3
B
393 396parallel
Strand 4
B
373 376anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
490 495anti-parallel
Strand 3
B
463 466anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
386 388anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il