Analysis of interatomic Contacts of Structural Units in PDB entry:
7UIB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UIB entry

There are 6 chains in PDB entry 7UIB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 2	SER 129
C	GLU 488	GLY 582
E	GLN 1	SER 129
F	ARG 489	GLY 582
D	LYS 848	LYS 1252
A	ILE 847	LYS 1252

There are 12 helices in PDB entry 7UIB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	87	91	Right-handed 310
Helix 2	AA2	B	112	116	Right-handed 310
Helix 3	AA3	C	562	564	Right-handed 310
Helix 4	AA4	E	87	91	Right-handed 310
Helix 5	AA5	E	112	116	Right-handed 310
Helix 6	AA6	F	562	564	Right-handed 310
Helix 7	AA7	D	1055	1066	Right-handed alpha
Helix 8	AA8	D	1223	1228	Right-handed 310
Helix 9	AA9	D	1234	1238	Right-handed 310
Helix 10	AB1	A	1055	1066	Right-handed alpha
Helix 11	AB2	A	1223	1228	Right-handed 310
Helix 12	AB3	A	1234	1238	Right-handed 310

There are 26 sheets in PDB entry 7UIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	17	25	anti-parallel
Strand 3	B	78	84	anti-parallel
Strand 4	B	68	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	123	127	parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	32	39	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	57	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	123	127	parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	118	119	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	493	first strand
Strand 2	C	509	512	parallel
Strand 3	C	530	532	parallel
Strand 4	C	550	552	parallel
Strand 5	C	570	572	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	515	517	parallel
Strand 3	C	535	542	parallel
Strand 4	C	520	527	parallel
Strand 5	C	545	547	parallel
Strand 6	C	566	567	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	507	first strand
Strand 2	C	520	527	parallel
Strand 3	C	535	542	parallel
Strand 4	C	555	559	parallel
Strand 5	C	575	577	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	78	82	anti-parallel
Strand 4	E	69	73	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	46	51	anti-parallel
Strand 3	E	32	39	anti-parallel
Strand 4	E	92	100	anti-parallel
Strand 5	E	118	119	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	46	51	anti-parallel
Strand 3	E	32	39	anti-parallel
Strand 4	E	92	100	anti-parallel
Strand 5	E	123	125	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	490	493	first strand
Strand 2	F	509	512	parallel
Strand 3	F	530	532	parallel
Strand 4	F	550	552	parallel
Strand 5	F	570	572	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	496	497	first strand
Strand 2	F	515	517	parallel
Strand 3	F	535	542	parallel
Strand 4	F	520	527	parallel
Strand 5	F	545	547	parallel
Strand 6	F	566	567	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	501	507	first strand
Strand 2	F	520	527	parallel
Strand 3	F	535	542	parallel
Strand 4	F	555	559	parallel
Strand 5	F	575	577	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	861	864	first strand
Strand 2	D	851	858	anti-parallel
Strand 3	D	1041	1050	anti-parallel
Strand 4	D	884	891	anti-parallel
Strand 5	D	879	881	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	861	864	first strand
Strand 2	D	851	858	anti-parallel
Strand 3	D	1041	1050	anti-parallel
Strand 4	D	915	922	anti-parallel
Strand 5	D	990	997	anti-parallel
Strand 6	D	1002	1007	anti-parallel
Strand 7	D	1010	1016	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	871	876	first strand
Strand 2	D	896	901	anti-parallel
Strand 3	D	1028	1034	anti-parallel
Strand 4	D	937	943	anti-parallel
Strand 5	D	949	955	anti-parallel
Strand 6	D	958	964	anti-parallel
Strand 7	D	970	976	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	909	910	first strand
Strand 2	D	1023	1024	anti-parallel

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There are 13 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1147	1155	first strand
Strand 2	D	1158	1164	anti-parallel
Strand 3	D	1173	1177	anti-parallel
Strand 4	D	1218	1222	anti-parallel
Strand 5	D	1208	1215	anti-parallel
Strand 6	D	1196	1203	anti-parallel
Strand 7	D	1147	1155	first strand
Strand 8	D	1126	1131	anti-parallel
Strand 9	D	1086	1090	anti-parallel
Strand 10	D	1240	1243	anti-parallel
Strand 11	D	1196	1203	anti-parallel
Strand 12	D	1186	1193	anti-parallel
Strand 13	D	1196	1203	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1099	1100	first strand
Strand 2	D	1106	1107	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1114	1115	first strand
Strand 2	D	1118	1119	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	861	864	first strand
Strand 2	A	851	858	anti-parallel
Strand 3	A	1041	1050	anti-parallel
Strand 4	A	887	891	anti-parallel
Strand 5	A	879	880	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	861	864	first strand
Strand 2	A	851	858	anti-parallel
Strand 3	A	1041	1050	anti-parallel
Strand 4	A	915	922	anti-parallel
Strand 5	A	990	997	anti-parallel
Strand 6	A	1002	1007	anti-parallel
Strand 7	A	1010	1016	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	871	876	first strand
Strand 2	A	896	901	anti-parallel
Strand 3	A	1028	1034	anti-parallel
Strand 4	A	937	943	anti-parallel
Strand 5	A	949	955	anti-parallel
Strand 6	A	958	964	anti-parallel
Strand 7	A	970	976	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	910	first strand
Strand 2	A	1023	1024	anti-parallel

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There are 13 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1147	1155	first strand
Strand 2	A	1158	1164	anti-parallel
Strand 3	A	1173	1177	anti-parallel
Strand 4	A	1218	1222	anti-parallel
Strand 5	A	1208	1215	anti-parallel
Strand 6	A	1196	1203	anti-parallel
Strand 7	A	1147	1155	first strand
Strand 8	A	1126	1131	anti-parallel
Strand 9	A	1086	1090	anti-parallel
Strand 10	A	1240	1243	anti-parallel
Strand 11	A	1196	1203	anti-parallel
Strand 12	A	1186	1193	anti-parallel
Strand 13	A	1196	1203	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1096	1100	first strand
Strand 2	A	1106	1111	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1114	1115	first strand
Strand 2	A	1118	1119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UIB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UIB