Analysis of interatomic Contacts of Structural Units in PDB entry:
7UIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UIM entry

There are 2 chains in PDB entry 7UIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 1 U 638
D
 ASN 5CYS 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7UIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
6 11Right-handed alpha
Helix 2
AA2
D
12 27Right-handed alpha
Helix 3
AA3
D
36 58Right-handed alpha
Helix 4
AA4
D
84 106Right-handed alpha
Helix 5
AA5
D
118 133Right-handed alpha
Helix 6
AA6
D
144 149Right-handed alpha
Helix 7
AA7
D
150 162Right-handed alpha
Helix 8
AA8
D
164 177Right-handed alpha
Helix 9
AA9
D
198 218Right-handed alpha
Helix 10
AB1
D
234 252Right-handed alpha
Helix 11
AB2
D
266 270Right-handed 310
Helix 12
AB3
D
291 306Right-handed alpha
Helix 13
AB4
D
313 332Right-handed alpha
Helix 14
AB5
D
337 361Right-handed alpha
Helix 15
AB6
D
362 374Right-handed alpha
Helix 16
AB7
D
376 387Right-handed alpha
Helix 17
AB8
D
390 396Right-handed alpha
Helix 18
AB9
D
397 403Right-handed alpha
Helix 19
AC1
D
404 412Right-handed alpha
Helix 20
AC2
D
415 423Right-handed alpha
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There are 2 sheets in PDB entry 7UIM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
220 223first strand
Strand 2
D
228 232anti-parallel
Strand 3
D
136 140anti-parallel
Strand 4
D
264 265anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
275 277first strand
Strand 2
D
288 290anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il