Analysis of interatomic Contacts of Structural Units in PDB entry:
7UJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UJ4 entry

There are 2 chains in PDB entry 7UJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLN 582
B
 GLY 2GLN 582
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7UJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
15 28Right-handed alpha
Helix 3
AA3
A
33 50Right-handed alpha
Helix 4
AA4
A
82 101Right-handed alpha
Helix 5
AA5
A
102 106Right-handed 310
Helix 6
AA6
A
114 128Right-handed alpha
Helix 7
AA7
A
142 150Right-handed alpha
Helix 8
AA8
A
153 168Right-handed alpha
Helix 9
AA9
A
211 217Right-handed alpha
Helix 10
AB1
A
222 226Right-handed 310
Helix 11
AB2
A
231 243Right-handed alpha
Helix 12
AB3
A
253 270Right-handed alpha
Helix 13
AB4
A
276 290Right-handed alpha
Helix 14
AB5
A
297 313Right-handed alpha
Helix 15
AB6
A
318 331Right-handed alpha
Helix 16
AB7
A
333 349Right-handed alpha
Helix 17
AB8
A
354 356Right-handed 310
Helix 18
AB9
A
357 370Right-handed alpha
Helix 19
AC1
A
370 383Right-handed alpha
Helix 20
AC2
A
402 405Right-handed 310
Helix 21
AC3
A
406 425Right-handed alpha
Helix 22
AC4
A
433 445Right-handed alpha
Helix 23
AC5
A
448 453Right-handed alpha
Helix 24
AC6
A
555 560Right-handed alpha
Helix 25
AC7
A
561 567Right-handed alpha
Helix 26
AC8
A
571 581Right-handed alpha
Helix 27
AC9
B
4 9Right-handed alpha
Helix 28
AD1
B
15 28Right-handed alpha
Helix 29
AD2
B
33 50Right-handed alpha
Helix 30
AD3
B
82 101Right-handed alpha
Helix 31
AD4
B
102 106Right-handed 310
Helix 32
AD5
B
114 129Right-handed alpha
Helix 33
AD6
B
142 150Right-handed alpha
Helix 34
AD7
B
153 168Right-handed alpha
Helix 35
AD8
B
211 217Right-handed alpha
Helix 36
AD9
B
219 226Right-handed 310
Helix 37
AE1
B
231 242Right-handed alpha
Helix 38
AE2
B
253 270Right-handed alpha
Helix 39
AE3
B
276 290Right-handed alpha
Helix 40
AE4
B
297 313Right-handed alpha
Helix 41
AE5
B
318 332Right-handed alpha
Helix 42
AE6
B
333 349Right-handed alpha
Helix 43
AE7
B
354 356Right-handed 310
Helix 44
AE8
B
357 370Right-handed alpha
Helix 45
AE9
B
370 386Right-handed alpha
Helix 46
AF1
B
402 405Right-handed 310
Helix 47
AF2
B
406 425Right-handed alpha
Helix 48
AF3
B
433 445Right-handed alpha
Helix 49
AF4
B
448 453Right-handed alpha
Helix 50
AF5
B
555 560Right-handed alpha
Helix 51
AF6
B
561 567Right-handed alpha
Helix 52
AF7
B
571 581Right-handed alpha
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There are 4 sheets in PDB entry 7UJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
182 186anti-parallel
Strand 3
A
174 177anti-parallel
Strand 4
A
228 229anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
251 252anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
182 186anti-parallel
Strand 3
B
174 177anti-parallel
Strand 4
B
228 229anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 248first strand
Strand 2
B
251 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il