Analysis of interatomic Contacts of Structural Units in PDB entry:
7UJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UJA entry

There are 18 chains in PDB entry 7UJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 138	SER 509
B	VAL 2	THR 120
C	LEU 138	SER 509
D	ASP 1	VAL 105
E	VAL 2	ALA 125
F	VAL 3	PHE 107
G	VAL 2	THR 120
I	VAL 2	ALA 125
J	VAL 3	PHE 107
K	LEU 138	SER 509
L	VAL 2	THR 120
N	VAL 2	ALA 125
O	VAL 3	PHE 107
H	ASP 1	VAL 105
M	ASP 1	VAL 105
P	SER 25	CYS 103
Q	SER 25	CYS 103
R	SER 25	CYS 103

There are 49 helices in PDB entry 7UJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	151	156	Right-handed alpha
Helix 2	AA2	A	163	171	Right-handed alpha
Helix 3	AA3	A	195	200	Right-handed alpha
Helix 4	AA4	A	203	208	Right-handed alpha
Helix 5	AA5	A	216	238	Right-handed alpha
Helix 6	AA6	A	253	262	Right-handed alpha
Helix 7	AA7	A	269	276	Right-handed alpha
Helix 8	AA8	A	277	282	Right-handed alpha
Helix 9	AA9	A	379	385	Right-handed alpha
Helix 10	AB1	A	474	478	Right-handed 310
Helix 11	AB2	A	492	506	Right-handed alpha
Helix 12	AB3	B	28	32	Right-handed 310
Helix 13	AB4	B	87	91	Right-handed 310
Helix 14	AB5	C	138	142	Right-handed 310
Helix 15	AB6	C	151	156	Right-handed alpha
Helix 16	AB7	C	163	171	Right-handed alpha
Helix 17	AB8	C	195	200	Right-handed alpha
Helix 18	AB9	C	203	208	Right-handed alpha
Helix 19	AC1	C	216	227	Right-handed alpha
Helix 20	AC2	C	227	241	Right-handed alpha
Helix 21	AC3	C	253	262	Right-handed alpha
Helix 22	AC4	C	269	276	Right-handed alpha
Helix 23	AC5	C	277	282	Right-handed alpha
Helix 24	AC6	C	368	372	Right-handed 310
Helix 25	AC7	C	379	385	Right-handed alpha
Helix 26	AC8	C	474	478	Right-handed 310
Helix 27	AC9	C	492	507	Right-handed alpha
Helix 28	AD1	G	28	32	Right-handed 310
Helix 29	AD2	G	87	91	Right-handed 310
Helix 30	AD3	I	62	65	Right-handed 310
Helix 31	AD4	K	148	159	Right-handed alpha
Helix 32	AD5	K	163	171	Right-handed alpha
Helix 33	AD6	K	195	200	Right-handed alpha
Helix 34	AD7	K	203	208	Right-handed alpha
Helix 35	AD8	K	216	241	Right-handed alpha
Helix 36	AD9	K	253	262	Right-handed alpha
Helix 37	AE1	K	269	276	Right-handed alpha
Helix 38	AE2	K	277	282	Right-handed alpha
Helix 39	AE3	K	376	378	Right-handed 310
Helix 40	AE4	K	379	385	Right-handed alpha
Helix 41	AE5	K	473	478	Right-handed 310
Helix 42	AE6	K	492	507	Right-handed alpha
Helix 43	AE7	L	28	32	Right-handed 310
Helix 44	AE8	L	87	91	Right-handed 310
Helix 45	AE9	N	62	65	Right-handed 310
Helix 46	AF1	O	80	84	Right-handed 310
Helix 47	AF2	P	73	95	Right-handed alpha
Helix 48	AF3	Q	74	97	Right-handed alpha
Helix 49	AF4	R	74	97	Right-handed alpha

There are 46 sheets in PDB entry 7UJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	186	190	anti-parallel
Strand 3	P	49	59	parallel
Strand 4	A	297	306	anti-parallel
Strand 5	A	286	291	anti-parallel
Strand 6	A	243	244	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	E	107	108	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	340	344	anti-parallel
Strand 3	A	313	318	anti-parallel
Strand 4	P	38	42	anti-parallel
Strand 5	P	29	33	anti-parallel
Strand 6	A	465	469	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	394	398	anti-parallel
Strand 3	A	490	491	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	407	first strand
Strand 2	A	412	416	anti-parallel
Strand 3	A	438	442	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	422	426	anti-parallel
Strand 3	A	449	452	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	68	73	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	34	39	anti-parallel
Strand 4	B	93	98	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	180	first strand
Strand 2	C	186	190	anti-parallel
Strand 3	Q	49	59	parallel
Strand 4	C	297	306	anti-parallel
Strand 5	C	286	291	anti-parallel
Strand 6	C	243	244	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	N	107	108	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	352	first strand
Strand 2	C	340	344	anti-parallel
Strand 3	C	313	318	anti-parallel
Strand 4	Q	38	42	anti-parallel
Strand 5	Q	29	33	anti-parallel
Strand 6	C	465	469	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	336	first strand
Strand 2	C	394	398	anti-parallel
Strand 3	C	490	491	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	407	first strand
Strand 2	C	412	416	anti-parallel
Strand 3	C	438	442	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	434	first strand
Strand 2	C	422	426	anti-parallel
Strand 3	C	449	452	anti-parallel
Strand 4	C	455	457	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	20	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	65	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	44	49	anti-parallel
Strand 3	D	34	38	anti-parallel
Strand 4	D	85	89	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	118	122	parallel
Strand 3	E	92	95	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	71	76	anti-parallel
Strand 4	F	63	67	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	103	105	parallel
Strand 3	F	86	92	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	46	50	anti-parallel
Strand 6	F	54	55	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	103	105	parallel
Strand 3	F	86	92	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	23	first strand
Strand 2	G	78	83	anti-parallel
Strand 3	G	68	73	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	51	first strand
Strand 2	G	34	39	anti-parallel
Strand 3	G	93	98	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	118	122	parallel
Strand 3	I	92	95	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	107	108	first strand
Strand 2	K	213	214	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	71	76	anti-parallel
Strand 4	J	63	67	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	103	105	parallel
Strand 3	J	86	92	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	46	50	anti-parallel
Strand 6	J	54	55	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	103	105	parallel
Strand 3	J	86	92	anti-parallel
Strand 4	J	97	98	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	177	180	first strand
Strand 2	K	186	190	anti-parallel
Strand 3	R	49	59	parallel
Strand 4	K	297	306	anti-parallel
Strand 5	K	286	291	anti-parallel
Strand 6	K	243	244	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	349	352	first strand
Strand 2	K	340	344	anti-parallel
Strand 3	K	313	318	anti-parallel
Strand 4	R	38	42	anti-parallel
Strand 5	R	29	33	anti-parallel
Strand 6	K	465	469	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	333	336	first strand
Strand 2	K	394	398	anti-parallel
Strand 3	K	490	491	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	406	407	first strand
Strand 2	K	412	413	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	415	416	first strand
Strand 2	K	438	439	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	430	434	first strand
Strand 2	K	422	426	anti-parallel
Strand 3	K	449	452	anti-parallel
Strand 4	K	455	458	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	78	83	anti-parallel
Strand 3	L	68	73	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	59	first strand
Strand 2	L	45	51	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	93	98	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	70	73	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	118	122	parallel
Strand 3	N	92	95	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	7	first strand
Strand 2	O	19	25	anti-parallel
Strand 3	O	71	76	anti-parallel
Strand 4	O	63	67	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	11	first strand
Strand 2	O	103	105	parallel
Strand 3	O	86	92	anti-parallel
Strand 4	O	34	39	anti-parallel
Strand 5	O	46	50	anti-parallel
Strand 6	O	54	55	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	11	first strand
Strand 2	O	103	105	parallel
Strand 3	O	86	92	anti-parallel
Strand 4	O	97	98	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	20	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	65	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	54	first strand
Strand 2	H	44	49	anti-parallel
Strand 3	H	33	38	anti-parallel
Strand 4	H	85	90	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	20	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	65	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	44	49	anti-parallel
Strand 3	M	34	38	anti-parallel
Strand 4	M	85	89	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UJA