Analysis of interatomic Contacts of Structural Units in PDB entry:
7UJB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UJB entry

There are 2 chains in PDB entry 7UJB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 196	GLY 828
B	VAL 196	ILE 820

There are111 helices in PDB entry 7UJB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	202	211	Right-handed alpha
Helix 2	AA2	A	218	227	Right-handed alpha
Helix 3	AA3	A	246	259	Right-handed alpha
Helix 4	AA4	A	270	285	Right-handed alpha
Helix 5	AA5	A	322	330	Right-handed alpha
Helix 6	AA6	A	345	350	Right-handed 310
Helix 7	AA7	A	353	369	Right-handed alpha
Helix 8	AA8	A	383	390	Right-handed alpha
Helix 9	AA9	A	414	430	Right-handed alpha
Helix 10	AB1	A	448	462	Right-handed alpha
Helix 11	AB2	A	474	487	Right-handed alpha
Helix 12	AB3	A	523	532	Right-handed alpha
Helix 13	AB4	A	562	573	Right-handed alpha
Helix 14	AB5	A	583	598	Right-handed alpha
Helix 15	AB6	A	600	610	Right-handed alpha
Helix 16	AB7	A	617	629	Right-handed alpha
Helix 17	AB8	A	641	650	Right-handed alpha
Helix 18	AB9	A	653	663	Right-handed alpha
Helix 19	AC1	A	668	677	Right-handed alpha
Helix 20	AC2	A	685	696	Right-handed alpha
Helix 21	AC3	A	706	714	Right-handed alpha
Helix 22	AC4	A	715	720	Right-handed alpha
Helix 23	AC5	A	724	740	Right-handed alpha
Helix 24	AC6	A	746	765	Right-handed alpha
Helix 25	AC7	A	767	780	Right-handed alpha
Helix 26	AC8	A	784	810	Right-handed alpha
Helix 27	AC9	A	811	827	Right-handed alpha
Helix 28	AD1	B	202	211	Right-handed alpha
Helix 29	AD2	B	218	227	Right-handed alpha
Helix 30	AD3	B	246	259	Right-handed alpha
Helix 31	AD4	B	270	285	Right-handed alpha
Helix 32	AD5	B	322	330	Right-handed alpha
Helix 33	AD6	B	345	350	Right-handed 310
Helix 34	AD7	B	353	369	Right-handed alpha
Helix 35	AD8	B	383	390	Right-handed alpha
Helix 36	AD9	B	414	430	Right-handed alpha
Helix 37	AE1	B	448	462	Right-handed alpha
Helix 38	AE2	B	474	487	Right-handed alpha
Helix 39	AE3	B	523	532	Right-handed alpha
Helix 40	AE4	B	562	573	Right-handed alpha
Helix 41	AE5	B	583	598	Right-handed alpha
Helix 42	AE6	B	600	610	Right-handed alpha
Helix 43	AE7	B	617	628	Right-handed alpha
Helix 44	AE8	B	641	650	Right-handed alpha
Helix 45	AE9	B	653	663	Right-handed alpha
Helix 46	AF1	B	668	677	Right-handed alpha
Helix 47	AF2	B	685	696	Right-handed alpha
Helix 48	AF3	B	706	714	Right-handed alpha
Helix 49	AF4	B	715	720	Right-handed alpha
Helix 50	AF5	B	724	740	Right-handed alpha
Helix 51	AF6	B	746	765	Right-handed alpha
Helix 52	AF7	B	767	780	Right-handed alpha
Helix 53	AF8	B	784	809	Right-handed alpha
Helix 54	AF9	B	811	827	Right-handed alpha
Helix 55	AG1	C	202	211	Right-handed alpha
Helix 56	AG2	C	218	227	Right-handed alpha
Helix 57	AG3	C	228	232	Right-handed 310
Helix 58	AG4	C	246	259	Right-handed alpha
Helix 59	AG5	C	270	285	Right-handed alpha
Helix 60	AG6	C	322	330	Right-handed alpha
Helix 61	AG7	C	345	350	Right-handed 310
Helix 62	AG8	C	353	369	Right-handed alpha
Helix 63	AG9	C	383	390	Right-handed alpha
Helix 64	AH1	C	414	431	Right-handed alpha
Helix 65	AH2	C	448	462	Right-handed alpha
Helix 66	AH3	C	474	487	Right-handed alpha
Helix 67	AH4	C	523	532	Right-handed alpha
Helix 68	AH5	C	562	573	Right-handed alpha
Helix 69	AH6	C	583	598	Right-handed alpha
Helix 70	AH7	C	600	610	Right-handed alpha
Helix 71	AH8	C	617	629	Right-handed alpha
Helix 72	AH9	C	641	650	Right-handed alpha
Helix 73	AI1	C	653	663	Right-handed alpha
Helix 74	AI2	C	668	677	Right-handed alpha
Helix 75	AI3	C	685	696	Right-handed alpha
Helix 76	AI4	C	706	714	Right-handed alpha
Helix 77	AI5	C	715	720	Right-handed alpha
Helix 78	AI6	C	724	740	Right-handed alpha
Helix 79	AI7	C	746	765	Right-handed alpha
Helix 80	AI8	C	767	780	Right-handed alpha
Helix 81	AI9	C	784	810	Right-handed alpha
Helix 82	AJ1	C	811	827	Right-handed alpha
Helix 83	AJ2	D	202	211	Right-handed alpha
Helix 84	AJ3	D	218	227	Right-handed alpha
Helix 85	AJ4	D	228	232	Right-handed 310
Helix 86	AJ5	D	244	259	Right-handed alpha
Helix 87	AJ6	D	270	285	Right-handed alpha
Helix 88	AJ7	D	286	288	Right-handed 310
Helix 89	AJ8	D	322	330	Right-handed alpha
Helix 90	AJ9	D	345	350	Right-handed 310
Helix 91	AK1	D	354	369	Right-handed alpha
Helix 92	AK2	D	383	390	Right-handed alpha
Helix 93	AK3	D	414	431	Right-handed alpha
Helix 94	AK4	D	448	462	Right-handed alpha
Helix 95	AK5	D	474	487	Right-handed alpha
Helix 96	AK6	D	523	532	Right-handed alpha
Helix 97	AK7	D	562	573	Right-handed alpha
Helix 98	AK8	D	583	598	Right-handed alpha
Helix 99	AK9	D	600	610	Right-handed alpha
Helix 100	AL1	D	617	629	Right-handed alpha
Helix 101	AL2	D	641	650	Right-handed alpha
Helix 102	AL3	D	653	663	Right-handed alpha
Helix 103	AL4	D	668	677	Right-handed alpha
Helix 104	AL5	D	685	696	Right-handed alpha
Helix 105	AL6	D	706	714	Right-handed alpha
Helix 106	AL7	D	715	720	Right-handed alpha
Helix 107	AL8	D	724	740	Right-handed alpha
Helix 108	AL9	D	746	765	Right-handed alpha
Helix 109	AM1	D	767	780	Right-handed alpha
Helix 110	AM2	D	784	810	Right-handed alpha
Helix 111	AM3	D	811	827	Right-handed alpha

There are 17 sheets in PDB entry 7UJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	294	first strand
Strand 2	A	317	321	parallel
Strand 3	A	262	267	parallel
Strand 4	A	338	343	parallel
Strand 5	A	373	378	parallel
Strand 6	A	235	239	parallel
Strand 7	A	394	398	parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	468	first strand
Strand 2	A	492	495	parallel
Strand 3	A	442	445	parallel
Strand 4	A	509	512	parallel
Strand 5	A	544	549	parallel
Strand 6	A	406	411	parallel
Strand 7	D	406	411	anti-parallel
Strand 8	D	544	549	parallel
Strand 9	D	509	512	parallel
Strand 10	D	442	445	parallel
Strand 11	D	492	495	parallel
Strand 12	D	466	468	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	517	first strand
Strand 2	A	520	521	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	634	first strand
Strand 2	A	637	640	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	684	first strand
Strand 2	A	781	783	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	294	first strand
Strand 2	B	317	321	parallel
Strand 3	B	262	267	parallel
Strand 4	B	338	343	parallel
Strand 5	B	373	378	parallel
Strand 6	B	235	239	parallel
Strand 7	B	394	398	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	411	first strand
Strand 2	B	544	549	parallel
Strand 3	B	509	512	parallel
Strand 4	B	442	445	parallel
Strand 5	B	492	495	parallel
Strand 6	B	466	469	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	634	first strand
Strand 2	B	637	640	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	684	first strand
Strand 2	B	781	783	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	294	first strand
Strand 2	C	317	321	parallel
Strand 3	C	262	267	parallel
Strand 4	C	338	343	parallel
Strand 5	C	373	378	parallel
Strand 6	C	235	239	parallel
Strand 7	C	394	398	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	411	first strand
Strand 2	C	544	549	parallel
Strand 3	C	509	512	parallel
Strand 4	C	442	445	parallel
Strand 5	C	492	495	parallel
Strand 6	C	466	468	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	631	634	first strand
Strand 2	C	637	640	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	682	684	first strand
Strand 2	C	781	783	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	294	first strand
Strand 2	D	317	321	parallel
Strand 3	D	262	267	parallel
Strand 4	D	338	343	parallel
Strand 5	D	373	378	parallel
Strand 6	D	235	239	parallel
Strand 7	D	394	398	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	516	517	first strand
Strand 2	D	520	521	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	631	634	first strand
Strand 2	D	637	640	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	684	first strand
Strand 2	D	781	783	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UJB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UJB