Analysis of interatomic Contacts of Structural Units in PDB entry:
7UJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UJD entry

There are 7 chains in PDB entry 7UJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 260ASN 903
C
 SER 1VAL 99
D
 TYR 34GLY 110
E
 SER 29LEU 98
F
 SER 33ALA 108
Z
 PHE 2VAL 5
Z
 LEU 7GLY 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7UJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
261 273Right-handed alpha
Helix 2
AA2
A
274 283Right-handed alpha
Helix 3
AA3
A
287 302Right-handed alpha
Helix 4
AA4
A
313 322Right-handed alpha
Helix 5
AA5
A
325 338Right-handed alpha
Helix 6
AA6
A
344 349Right-handed alpha
Helix 7
AA7
A
368 382Right-handed alpha
Helix 8
AA8
A
395 400Right-handed alpha
Helix 9
AA9
A
401 403Right-handed 310
Helix 10
AB1
A
404 418Right-handed alpha
Helix 11
AB2
A
421 430Right-handed alpha
Helix 12
AB3
A
431 435Right-handed 310
Helix 13
AB4
A
437 451Right-handed alpha
Helix 14
AB5
A
460 467Right-handed alpha
Helix 15
AB6
A
474 489Right-handed alpha
Helix 16
AB7
A
494 502Right-handed alpha
Helix 17
AB8
A
503 506Right-handed 310
Helix 18
AB9
A
511 526Right-handed alpha
Helix 19
AC1
A
531 545Right-handed alpha
Helix 20
AC2
A
552 555Right-handed 310
Helix 21
AC3
A
556 566Right-handed alpha
Helix 22
AC4
A
569 572Right-handed 310
Helix 23
AC5
A
573 580Right-handed alpha
Helix 24
AC6
A
581 583Right-handed 310
Helix 25
AC7
A
584 600Right-handed alpha
Helix 26
AC8
A
605 613Right-handed alpha
Helix 27
AC9
A
650 662Right-handed alpha
Helix 28
AD1
A
664 682Right-handed alpha
Helix 29
AD2
A
685 688Right-handed 310
Helix 30
AD3
A
689 698Right-handed alpha
Helix 31
AD4
A
703 714Right-handed alpha
Helix 32
AD5
A
718 733Right-handed alpha
Helix 33
AD6
A
738 752Right-handed alpha
Helix 34
AD7
A
755 770Right-handed alpha
Helix 35
AD8
A
771 774Right-handed 310
Helix 36
AD9
A
789 804Right-handed alpha
Helix 37
AE1
A
814 825Right-handed 310
Helix 38
AE2
D
56 59Right-handed 310
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There are 6 sheets in PDB entry 7UJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 777first strand
Strand 2
A
826 827anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
781 782first strand
Strand 2
A
787 788anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
872 873first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
897 901parallel
Strand 4
A
888 889anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
866 869first strand
Strand 2
A
843 847anti-parallel
Strand 3
A
879 882anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 55first strand
Strand 2
D
60 62anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
54 55first strand
Strand 2
F
60 61anti-parallel
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