Analysis of interatomic Contacts of Structural Units in PDB entry:
7UJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UJJ entry

There are 7 chains in PDB entry 7UJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLY 1	GLN 185
A	ARG 1	LYS 297
B	ALA 1	ASP 70
C	ALA 1	ASP 70
D	ALA 1	ASP 70
E	ALA 1	ASP 70
F	ALA 1	ASP 70

There are 32 helices in PDB entry 7UJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	1	11	Right-handed alpha
Helix 2	AA2	G	12	22	Right-handed alpha
Helix 3	AA3	G	30	34	Right-handed 310
Helix 4	AA4	G	35	44	Right-handed alpha
Helix 5	AA5	G	45	55	Right-handed alpha
Helix 6	AA6	G	68	77	Right-handed alpha
Helix 7	AA7	G	78	87	Right-handed alpha
Helix 8	AA8	G	101	110	Right-handed alpha
Helix 9	AA9	G	111	121	Right-handed alpha
Helix 10	AB1	G	134	141	Right-handed alpha
Helix 11	AB2	G	144	154	Right-handed alpha
Helix 12	AB3	G	167	175	Right-handed alpha
Helix 13	AB4	G	177	184	Right-handed alpha
Helix 14	AB5	A	9	24	Right-handed alpha
Helix 15	AB6	A	93	96	Right-handed 310
Helix 16	AB7	A	113	122	Right-handed alpha
Helix 17	AB8	A	131	145	Right-handed alpha
Helix 18	AB9	A	151	165	Right-handed alpha
Helix 19	AC1	A	165	171	Right-handed alpha
Helix 20	AC2	A	171	180	Right-handed alpha
Helix 21	AC3	A	181	183	Right-handed 310
Helix 22	AC4	A	192	201	Right-handed alpha
Helix 23	AC5	A	201	209	Right-handed alpha
Helix 24	AC6	A	210	212	Right-handed 310
Helix 25	AC7	A	227	235	Right-handed alpha
Helix 26	AC8	A	278	285	Right-handed alpha
Helix 27	AC9	A	289	296	Right-handed alpha
Helix 28	AD1	B	34	46	Right-handed alpha
Helix 29	AD2	C	34	46	Right-handed alpha
Helix 30	AD3	D	34	46	Right-handed alpha
Helix 31	AD4	E	34	46	Right-handed alpha
Helix 32	AD5	F	34	46	Right-handed alpha

There are 9 sheets in PDB entry 7UJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	49	55	parallel
Strand 3	A	67	72	anti-parallel
Strand 4	A	78	83	anti-parallel
Strand 5	A	88	91	anti-parallel
Strand 6	A	104	107	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	33	first strand
Strand 2	A	36	41	anti-parallel
Strand 3	A	237	238	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	189	190	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	218	220	anti-parallel
Strand 3	A	274	277	parallel
Strand 4	A	268	271	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	48	52	anti-parallel
Strand 3	B	64	68	anti-parallel
Strand 4	C	8	13	anti-parallel
Strand 5	C	19	23	anti-parallel
Strand 6	C	26	30	anti-parallel
Strand 7	C	60	61	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	26	30	parallel
Strand 3	B	19	23	anti-parallel
Strand 4	B	8	13	anti-parallel
Strand 5	F	64	68	anti-parallel
Strand 6	F	48	52	anti-parallel
Strand 7	F	2	6	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	49	52	anti-parallel
Strand 3	C	64	68	anti-parallel
Strand 4	D	2	13	anti-parallel
Strand 5	D	19	23	anti-parallel
Strand 6	D	26	30	anti-parallel
Strand 7	D	60	61	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	49	52	anti-parallel
Strand 3	C	64	68	anti-parallel
Strand 4	D	2	13	anti-parallel
Strand 5	D	48	52	anti-parallel
Strand 6	D	64	68	anti-parallel
Strand 7	E	8	13	anti-parallel
Strand 8	E	19	23	anti-parallel
Strand 9	E	26	30	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	48	52	anti-parallel
Strand 3	E	64	68	anti-parallel
Strand 4	F	8	13	anti-parallel
Strand 5	F	19	23	anti-parallel
Strand 6	F	26	30	anti-parallel
Strand 7	F	60	61	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UJJ