Analysis of interatomic Contacts of Structural Units in PDB entry:
7UKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UKD entry

There are 4 chains in PDB entry 7UKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 166ALA 424
B
 THR 166ALA 424
C
 THR 166ALA 424
D
 THR 166ALA 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 7UKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 177Right-handed alpha
Helix 2
AA2
A
178 180Right-handed 310
Helix 3
AA3
A
181 205Right-handed alpha
Helix 4
AA4
A
221 225Right-handed alpha
Helix 5
AA5
A
225 251Right-handed alpha
Helix 6
AA6
A
253 260Right-handed alpha
Helix 7
AA7
A
260 279Right-handed alpha
Helix 8
AA8
A
287 296Right-handed alpha
Helix 9
AA9
A
297 301Right-handed 310
Helix 10
AB1
A
302 307Right-handed alpha
Helix 11
AB2
A
311 320Right-handed alpha
Helix 12
AB3
A
320 347Right-handed alpha
Helix 13
AB4
A
356 369Right-handed alpha
Helix 14
AB5
A
380 400Right-handed alpha
Helix 15
AB6
A
400 424Right-handed alpha
Helix 16
AB7
B
167 177Right-handed alpha
Helix 17
AB8
B
181 205Right-handed alpha
Helix 18
AB9
B
220 225Right-handed alpha
Helix 19
AC1
B
225 251Right-handed alpha
Helix 20
AC2
B
253 260Right-handed alpha
Helix 21
AC3
B
260 279Right-handed alpha
Helix 22
AC4
B
280 283Right-handed 310
Helix 23
AC5
B
287 296Right-handed alpha
Helix 24
AC6
B
297 306Right-handed 310
Helix 25
AC7
B
307 320Right-handed alpha
Helix 26
AC8
B
321 347Right-handed alpha
Helix 27
AC9
B
356 369Right-handed alpha
Helix 28
AD1
B
380 398Right-handed alpha
Helix 29
AD2
B
401 424Right-handed alpha
Helix 30
AD3
C
167 177Right-handed alpha
Helix 31
AD4
C
178 180Right-handed 310
Helix 32
AD5
C
181 205Right-handed alpha
Helix 33
AD6
C
221 225Right-handed alpha
Helix 34
AD7
C
225 251Right-handed alpha
Helix 35
AD8
C
253 260Right-handed alpha
Helix 36
AD9
C
260 279Right-handed alpha
Helix 37
AE1
C
287 296Right-handed alpha
Helix 38
AE2
C
297 301Right-handed 310
Helix 39
AE3
C
302 307Right-handed alpha
Helix 40
AE4
C
311 320Right-handed alpha
Helix 41
AE5
C
320 347Right-handed alpha
Helix 42
AE6
C
356 369Right-handed alpha
Helix 43
AE7
C
380 400Right-handed alpha
Helix 44
AE8
C
400 424Right-handed alpha
Helix 45
AE9
D
167 177Right-handed alpha
Helix 46
AF1
D
181 205Right-handed alpha
Helix 47
AF2
D
220 225Right-handed alpha
Helix 48
AF3
D
225 251Right-handed alpha
Helix 49
AF4
D
253 260Right-handed alpha
Helix 50
AF5
D
260 279Right-handed alpha
Helix 51
AF6
D
280 283Right-handed 310
Helix 52
AF7
D
287 296Right-handed alpha
Helix 53
AF8
D
297 306Right-handed 310
Helix 54
AF9
D
307 320Right-handed alpha
Helix 55
AG1
D
321 347Right-handed alpha
Helix 56
AG2
D
356 369Right-handed alpha
Helix 57
AG3
D
380 398Right-handed alpha
Helix 58
AG4
D
401 424Right-handed alpha
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There are 2 sheets in PDB entry 7UKD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
219 220anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 209first strand
Strand 2
C
219 220anti-parallel
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