Analysis of interatomic Contacts of Structural Units in PDB entry:
7UKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UKE entry

There are 4 chains in PDB entry 7UKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 166ALA 424
B
 THR 166ALA 424
C
 THR 166ALA 424
D
 THR 166ALA 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 7UKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 177Right-handed alpha
Helix 2
AA2
A
178 181Right-handed 310
Helix 3
AA3
A
182 205Right-handed alpha
Helix 4
AA4
A
221 225Right-handed alpha
Helix 5
AA5
A
225 250Right-handed alpha
Helix 6
AA6
A
253 260Right-handed alpha
Helix 7
AA7
A
260 279Right-handed alpha
Helix 8
AA8
A
287 296Right-handed alpha
Helix 9
AA9
A
297 307Right-handed 310
Helix 10
AB1
A
308 320Right-handed alpha
Helix 11
AB2
A
320 347Right-handed alpha
Helix 12
AB3
A
356 369Right-handed alpha
Helix 13
AB4
A
380 398Right-handed alpha
Helix 14
AB5
A
400 424Right-handed alpha
Helix 15
AB6
B
167 177Right-handed alpha
Helix 16
AB7
B
178 181Right-handed 310
Helix 17
AB8
B
182 205Right-handed alpha
Helix 18
AB9
B
221 225Right-handed alpha
Helix 19
AC1
B
225 250Right-handed alpha
Helix 20
AC2
B
253 260Right-handed alpha
Helix 21
AC3
B
260 279Right-handed alpha
Helix 22
AC4
B
287 296Right-handed alpha
Helix 23
AC5
B
297 307Right-handed 310
Helix 24
AC6
B
308 320Right-handed alpha
Helix 25
AC7
B
320 347Right-handed alpha
Helix 26
AC8
B
356 369Right-handed alpha
Helix 27
AC9
B
380 398Right-handed alpha
Helix 28
AD1
B
400 424Right-handed alpha
Helix 29
AD2
C
167 177Right-handed alpha
Helix 30
AD3
C
178 181Right-handed 310
Helix 31
AD4
C
182 205Right-handed alpha
Helix 32
AD5
C
221 225Right-handed alpha
Helix 33
AD6
C
225 250Right-handed alpha
Helix 34
AD7
C
253 260Right-handed alpha
Helix 35
AD8
C
260 279Right-handed alpha
Helix 36
AD9
C
287 296Right-handed alpha
Helix 37
AE1
C
297 307Right-handed 310
Helix 38
AE2
C
308 320Right-handed alpha
Helix 39
AE3
C
320 347Right-handed alpha
Helix 40
AE4
C
356 369Right-handed alpha
Helix 41
AE5
C
380 398Right-handed alpha
Helix 42
AE6
C
400 424Right-handed alpha
Helix 43
AE7
D
167 177Right-handed alpha
Helix 44
AE8
D
178 181Right-handed 310
Helix 45
AE9
D
182 205Right-handed alpha
Helix 46
AF1
D
221 225Right-handed alpha
Helix 47
AF2
D
225 250Right-handed alpha
Helix 48
AF3
D
253 260Right-handed alpha
Helix 49
AF4
D
260 279Right-handed alpha
Helix 50
AF5
D
287 296Right-handed alpha
Helix 51
AF6
D
297 307Right-handed 310
Helix 52
AF7
D
308 320Right-handed alpha
Helix 53
AF8
D
320 347Right-handed alpha
Helix 54
AF9
D
356 369Right-handed alpha
Helix 55
AG1
D
380 398Right-handed alpha
Helix 56
AG2
D
400 424Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7UKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
219 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
219 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 210first strand
Strand 2
C
219 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
208 210first strand
Strand 2
D
219 220anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il