Analysis of interatomic Contacts of Structural Units in PDB entry:
7UKJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UKJ entry

There are 3 chains in PDB entry 7UKJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	ILE 623
B	ILE 5	ILE 623
C	THR 2	ILE 623

There are 17 helices in PDB entry 7UKJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	110	Right-handed 310
Helix 2	AA2	A	114	123	Right-handed alpha
Helix 3	AA3	A	154	160	Right-handed 310
Helix 4	AA4	A	162	167	Right-handed 310
Helix 5	AA5	A	176	189	Right-handed alpha
Helix 6	AA6	B	110	123	Right-handed alpha
Helix 7	AA7	B	125	129	Right-handed 310
Helix 8	AA8	B	153	160	Right-handed alpha
Helix 9	AA9	B	162	167	Right-handed 310
Helix 10	AB1	B	176	190	Right-handed alpha
Helix 11	AB2	C	42	46	Right-handed 310
Helix 12	AB3	C	115	124	Right-handed alpha
Helix 13	AB4	C	125	130	Right-handed 310
Helix 14	AB5	C	134	138	Right-handed 310
Helix 15	AB6	C	153	158	Right-handed alpha
Helix 16	AB7	C	162	167	Right-handed 310
Helix 17	AB8	C	176	189	Right-handed alpha

There are 39 sheets in PDB entry 7UKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	C	81	84	anti-parallel
Strand 3	C	49	52	anti-parallel
Strand 4	C	58	61	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	73	75	anti-parallel
Strand 3	A	65	67	anti-parallel
Strand 4	A	30	34	anti-parallel
Strand 5	A	89	93	anti-parallel
Strand 6	A	99	103	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	49	52	anti-parallel
Strand 3	A	81	85	anti-parallel
Strand 4	B	7	9	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	A	151	152	anti-parallel

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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	198	first strand
Strand 2	A	219	223	parallel
Strand 3	A	252	255	parallel
Strand 4	A	285	288	parallel
Strand 5	A	307	310	parallel
Strand 6	A	330	331	parallel
Strand 7	A	366	371	parallel
Strand 8	A	389	394	parallel
Strand 9	A	415	418	parallel
Strand 10	A	447	451	parallel
Strand 11	A	478	481	parallel
Strand 12	A	501	503	parallel
Strand 13	A	520	522	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	209	first strand
Strand 2	A	229	232	parallel
Strand 3	A	258	260	parallel
Strand 4	A	291	293	parallel
Strand 5	A	313	314	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	241	243	parallel
Strand 3	A	268	270	parallel
Strand 4	A	299	302	parallel
Strand 5	A	317	324	parallel
Strand 6	A	295	297	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	241	243	parallel
Strand 3	A	268	270	parallel
Strand 4	A	299	302	parallel
Strand 5	A	317	324	parallel
Strand 6	A	348	353	parallel
Strand 7	A	384	386	parallel
Strand 8	A	407	409	parallel
Strand 9	A	436	438	parallel
Strand 10	A	469	471	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	376	378	parallel
Strand 3	A	398	400	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	A	362	364	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	A	453	455	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	485	first strand
Strand 2	A	507	508	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	558	first strand
Strand 2	A	616	619	anti-parallel
Strand 3	A	582	583	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	65	67	anti-parallel
Strand 3	B	30	34	anti-parallel
Strand 4	B	89	93	anti-parallel
Strand 5	B	101	103	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	49	51	anti-parallel
Strand 3	B	82	83	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	151	152	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	198	first strand
Strand 2	B	221	223	parallel
Strand 3	B	252	255	parallel
Strand 4	B	285	288	parallel
Strand 5	B	307	310	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	229	232	parallel
Strand 3	B	258	260	parallel
Strand 4	B	291	293	parallel
Strand 5	B	313	314	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	239	242	parallel
Strand 3	B	266	269	parallel
Strand 4	B	297	300	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	323	first strand
Strand 2	B	348	352	parallel
Strand 3	B	382	386	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	367	369	parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	338	first strand
Strand 2	B	375	378	parallel
Strand 3	B	397	399	parallel
Strand 4	B	422	423	parallel
Strand 5	B	454	456	parallel
Strand 6	B	483	487	parallel
Strand 7	B	506	508	parallel
Strand 8	B	525	526	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	392	first strand
Strand 2	B	413	416	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	555	first strand
Strand 2	B	619	622	anti-parallel
Strand 3	B	579	580	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	559	first strand
Strand 2	B	615	616	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	65	68	anti-parallel
Strand 3	C	72	75	anti-parallel
Strand 4	C	78	79	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	151	152	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	C	229	232	parallel
Strand 3	C	258	260	parallel
Strand 4	C	291	293	parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	215	first strand
Strand 2	C	241	243	parallel
Strand 3	C	266	270	parallel
Strand 4	C	295	300	parallel
Strand 5	C	317	324	parallel
Strand 6	C	348	353	parallel
Strand 7	C	382	386	parallel
Strand 8	C	408	409	parallel
Strand 9	C	437	438	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	253	255	parallel
Strand 3	C	282	288	parallel
Strand 4	C	304	310	parallel
Strand 5	C	327	332	parallel
Strand 6	C	369	371	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	335	338	parallel
Strand 3	C	376	378	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	356	first strand
Strand 2	C	363	364	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	390	first strand
Strand 2	C	412	413	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	418	first strand
Strand 2	C	448	450	parallel
Strand 3	C	478	480	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	497	first strand
Strand 2	C	516	517	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	514	first strand
Strand 2	C	530	532	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	523	first strand
Strand 2	C	542	544	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	570	first strand
Strand 2	C	601	605	anti-parallel
Strand 3	C	594	598	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	583	584	first strand
Strand 2	C	617	618	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UKJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UKJ