Analysis of interatomic Contacts of Structural Units in PDB entry:
7UKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UKR entry

There are 2 chains in PDB entry 7UKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 568PRO 1042
B
 ARG 576PRO 1042
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 7UKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
575 579Right-handed 310
Helix 2
AA2
A
605 614Right-handed alpha
Helix 3
AA3
A
620 631Right-handed alpha
Helix 4
AA4
A
632 634Right-handed 310
Helix 5
AA5
A
636 649Right-handed alpha
Helix 6
AA6
A
673 681Right-handed alpha
Helix 7
AA7
A
681 700Right-handed alpha
Helix 8
AA8
A
701 706Right-handed alpha
Helix 9
AA9
A
707 721Right-handed alpha
Helix 10
AB1
A
726 743Right-handed alpha
Helix 11
AB2
A
770 774Right-handed 310
Helix 12
AB3
A
780 798Right-handed alpha
Helix 13
AB4
A
800 811Right-handed 310
Helix 14
AB5
A
813 818Right-handed alpha
Helix 15
AB6
A
818 841Right-handed alpha
Helix 16
AB7
A
844 865Right-handed alpha
Helix 17
AB8
A
867 879Right-handed alpha
Helix 18
AB9
A
880 885Right-handed alpha
Helix 19
AC1
A
886 892Right-handed alpha
Helix 20
AC2
A
894 907Right-handed alpha
Helix 21
AC3
A
908 920Right-handed alpha
Helix 22
AC4
A
930 944Right-handed alpha
Helix 23
AC5
A
957 973Right-handed alpha
Helix 24
AC6
A
984 993Right-handed alpha
Helix 25
AC7
A
1001 1017Right-handed alpha
Helix 26
AC8
B
605 614Right-handed alpha
Helix 27
AC9
B
620 631Right-handed alpha
Helix 28
AD1
B
632 634Right-handed 310
Helix 29
AD2
B
636 649Right-handed alpha
Helix 30
AD3
B
672 681Right-handed alpha
Helix 31
AD4
B
681 700Right-handed alpha
Helix 32
AD5
B
701 707Right-handed alpha
Helix 33
AD6
B
707 721Right-handed alpha
Helix 34
AD7
B
727 743Right-handed alpha
Helix 35
AD8
B
770 774Right-handed 310
Helix 36
AD9
B
780 798Right-handed alpha
Helix 37
AE1
B
800 811Right-handed 310
Helix 38
AE2
B
813 818Right-handed alpha
Helix 39
AE3
B
818 841Right-handed alpha
Helix 40
AE4
B
844 865Right-handed alpha
Helix 41
AE5
B
867 879Right-handed alpha
Helix 42
AE6
B
880 885Right-handed alpha
Helix 43
AE7
B
886 891Right-handed alpha
Helix 44
AE8
B
894 906Right-handed alpha
Helix 45
AE9
B
908 920Right-handed alpha
Helix 46
AF1
B
929 944Right-handed alpha
Helix 47
AF2
B
958 973Right-handed alpha
Helix 48
AF3
B
984 993Right-handed alpha
Helix 49
AF4
B
1001 1017Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7UKR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 588first strand
Strand 2
A
601 603anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
586 588first strand
Strand 2
B
601 604anti-parallel
Strand 3
B
956 957anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il