Analysis of interatomic Contacts of Structural Units in PDB entry:
7UL6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UL6 entry

There are 2 chains in PDB entry 7UL6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 39	LEU 495
B	GLN 39	VAL 258

There are 38 helices in PDB entry 7UL6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	55	Right-handed alpha
Helix 2	AA2	A	96	111	Right-handed alpha
Helix 3	AA3	A	119	123	Right-handed 310
Helix 4	AA4	A	139	145	Right-handed alpha
Helix 5	AA5	A	153	160	Right-handed alpha
Helix 6	AA6	A	166	171	Right-handed alpha
Helix 7	AA7	A	189	203	Right-handed alpha
Helix 8	AA8	A	205	214	Right-handed alpha
Helix 9	AA9	A	254	261	Right-handed 310
Helix 10	AB1	A	267	278	Right-handed alpha
Helix 11	AB2	A	279	283	Right-handed 310
Helix 12	AB3	A	284	295	Right-handed alpha
Helix 13	AB4	A	342	344	Right-handed 310
Helix 14	AB5	A	361	373	Right-handed alpha
Helix 15	AB6	A	381	414	Right-handed alpha
Helix 16	AB7	A	434	455	Right-handed alpha
Helix 17	AB8	A	459	467	Right-handed alpha
Helix 18	AB9	A	468	471	Right-handed 310
Helix 19	AC1	A	472	495	Right-handed alpha
Helix 20	AC2	B	40	55	Right-handed alpha
Helix 21	AC3	B	96	111	Right-handed alpha
Helix 22	AC4	B	119	123	Right-handed 310
Helix 23	AC5	B	139	145	Right-handed alpha
Helix 24	AC6	B	153	159	Right-handed alpha
Helix 25	AC7	B	166	172	Right-handed alpha
Helix 26	AC8	B	189	203	Right-handed alpha
Helix 27	AC9	B	205	214	Right-handed alpha
Helix 28	AD1	B	254	258	Right-handed 310
Helix 29	AD2	B	267	279	Right-handed alpha
Helix 30	AD3	B	284	295	Right-handed alpha
Helix 31	AD4	B	342	344	Right-handed 310
Helix 32	AD5	B	356	360	Right-handed 310
Helix 33	AD6	B	361	372	Right-handed alpha
Helix 34	AD7	B	381	416	Right-handed alpha
Helix 35	AD8	B	434	455	Right-handed alpha
Helix 36	AD9	B	459	467	Right-handed alpha
Helix 37	AE1	B	468	471	Right-handed 310
Helix 38	AE2	B	472	495	Right-handed alpha

There are 10 sheets in PDB entry 7UL6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	68	78	anti-parallel
Strand 3	A	58	65	anti-parallel
Strand 4	A	346	352	anti-parallel
Strand 5	A	335	341	anti-parallel
Strand 6	A	324	326	anti-parallel
Strand 7	A	316	318	anti-parallel
Strand 8	A	310	311	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	68	78	anti-parallel
Strand 3	A	58	65	anti-parallel
Strand 4	A	346	352	anti-parallel
Strand 5	A	335	341	anti-parallel
Strand 6	A	329	330	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	263	266	anti-parallel
Strand 3	A	224	225	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	129	131	anti-parallel
Strand 3	A	174	175	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	245	248	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	68	78	anti-parallel
Strand 3	B	58	65	anti-parallel
Strand 4	B	346	352	anti-parallel
Strand 5	B	335	341	anti-parallel
Strand 6	B	324	326	anti-parallel
Strand 7	B	316	318	anti-parallel
Strand 8	B	310	311	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	68	78	anti-parallel
Strand 3	B	58	65	anti-parallel
Strand 4	B	346	352	anti-parallel
Strand 5	B	335	341	anti-parallel
Strand 6	B	329	330	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	263	266	anti-parallel
Strand 3	B	224	225	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	129	131	anti-parallel
Strand 3	B	174	175	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	242	first strand
Strand 2	B	245	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UL6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UL6