Analysis of interatomic Contacts of Structural Units in PDB entry:
7UL7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UL7 entry

There are 8 chains in PDB entry 7UL7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	TYR 65	LEU 244
D	ILE 2	GLY 214
E	VAL 2	PRO 223
A	TYR 65	LEU 244
L	ILE 2	GLY 214
H	VAL 2	PRO 223
B	TYR 65	LEU 244
F	ILE 2	ILE 2

There are 55 helices in PDB entry 7UL7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	119	125	Right-handed alpha
Helix 2	AA2	C	132	143	Right-handed alpha
Helix 3	AA3	C	156	160	Right-handed 310
Helix 4	AA4	C	183	194	Right-handed alpha
Helix 5	AA5	C	237	242	Right-handed alpha
Helix 6	AA6	D	125	130	Right-handed alpha
Helix 7	AA7	D	185	189	Right-handed alpha
Helix 8	AA8	E	166	168	Right-handed 310
Helix 9	AA9	E	197	199	Right-handed 310
Helix 10	AB1	E	211	214	Right-handed 310
Helix 11	AB2	A	119	126	Right-handed alpha
Helix 12	AB3	A	132	138	Right-handed alpha
Helix 13	AB4	A	156	160	Right-handed 310
Helix 14	AB5	A	183	194	Right-handed alpha
Helix 15	AB6	A	237	242	Right-handed alpha
Helix 16	AB7	L	124	128	Right-handed 310
Helix 17	AB8	L	186	190	Right-handed 310
Helix 18	AB9	H	28	32	Right-handed 310
Helix 19	AC1	H	166	168	Right-handed 310
Helix 20	AC2	H	197	199	Right-handed 310
Helix 21	AC3	H	211	214	Right-handed 310
Helix 22	AC4	B	119	126	Right-handed alpha
Helix 23	AC5	B	132	143	Right-handed alpha
Helix 24	AC6	B	156	160	Right-handed 310
Helix 25	AC7	B	183	194	Right-handed alpha
Helix 26	AC8	B	237	244	Right-handed alpha
Helix 27	AC9	F	30	32	Right-handed 310
Helix 28	AD1	F	124	129	Right-handed 310
Helix 29	AD2	F	185	189	Right-handed alpha
Helix 30	AD3	G	166	168	Right-handed 310
Helix 31	AD4	G	197	199	Right-handed 310
Helix 32	AD5	G	212	214	Right-handed 310
Helix 33	AD6	c	293	298	Right-handed alpha
Helix 34	AD7	c	299	303	Right-handed 310
Helix 35	AD8	c	308	324	Right-handed alpha
Helix 36	AD9	c	333	344	Right-handed alpha
Helix 37	AE1	c	345	358	Right-handed alpha
Helix 38	AE2	c	395	397	Right-handed 310
Helix 39	AE3	c	398	414	Right-handed alpha
Helix 40	AE4	b	293	298	Right-handed alpha
Helix 41	AE5	b	299	303	Right-handed 310
Helix 42	AE6	b	307	325	Right-handed alpha
Helix 43	AE7	b	333	338	Right-handed alpha
Helix 44	AE8	b	339	344	Right-handed alpha
Helix 45	AE9	b	345	358	Right-handed alpha
Helix 46	AF1	b	395	397	Right-handed 310
Helix 47	AF2	b	398	414	Right-handed alpha
Helix 48	AF3	a	280	284	Right-handed 310
Helix 49	AF4	a	293	298	Right-handed alpha
Helix 50	AF5	a	299	303	Right-handed 310
Helix 51	AF6	a	307	325	Right-handed alpha
Helix 52	AF7	a	333	344	Right-handed alpha
Helix 53	AF8	a	345	358	Right-handed alpha
Helix 54	AF9	a	394	397	Right-handed 310
Helix 55	AG1	a	398	413	Right-handed alpha

There are 37 sheets in PDB entry 7UL7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	c	367	372	anti-parallel
Strand 3	c	383	384	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	88	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	100	107	anti-parallel
Strand 4	C	218	224	anti-parallel
Strand 5	C	162	166	anti-parallel
Strand 6	C	153	155	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	63	68	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	104	108	parallel
Strand 3	D	86	92	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	50	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	104	108	parallel
Strand 3	D	86	92	anti-parallel
Strand 4	D	98	99	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	131	141	anti-parallel
Strand 3	D	175	184	anti-parallel
Strand 4	D	164	165	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	151	first strand
Strand 2	D	193	199	anti-parallel
Strand 3	D	207	212	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	79	83	anti-parallel
Strand 4	E	70	74	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	117	121	parallel
Strand 3	E	93	100	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	60	61	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	134	first strand
Strand 2	E	145	155	anti-parallel
Strand 3	E	186	195	anti-parallel
Strand 4	E	173	175	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	164	first strand
Strand 2	E	205	210	anti-parallel
Strand 3	E	215	220	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	a	367	371	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	91	95	anti-parallel
Strand 3	A	102	107	anti-parallel
Strand 4	A	218	223	anti-parallel
Strand 5	A	162	164	anti-parallel
Strand 6	A	153	155	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	105	107	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	46	50	anti-parallel
Strand 3	L	35	39	anti-parallel
Strand 4	L	86	92	anti-parallel
Strand 5	L	98	99	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	131	141	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	164	165	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	151	first strand
Strand 2	L	193	199	anti-parallel
Strand 3	L	207	212	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	79	83	anti-parallel
Strand 4	H	70	74	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	93	100	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	186	195	anti-parallel
Strand 4	H	173	175	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	164	first strand
Strand 2	H	205	210	anti-parallel
Strand 3	H	215	220	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	b	362	372	anti-parallel
Strand 3	b	383	388	anti-parallel
Strand 4	b	391	392	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	91	95	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	218	223	anti-parallel
Strand 5	B	162	164	anti-parallel
Strand 6	B	153	155	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	71	76	anti-parallel
Strand 4	F	63	68	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	106	107	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	50	first strand
Strand 2	F	34	39	anti-parallel
Strand 3	F	86	92	anti-parallel
Strand 4	F	98	99	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	120	first strand
Strand 2	F	131	141	anti-parallel
Strand 3	F	175	184	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	152	first strand
Strand 2	F	193	200	anti-parallel
Strand 3	F	203	212	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	8	first strand
Strand 2	G	17	23	anti-parallel
Strand 3	G	79	85	anti-parallel
Strand 4	G	69	74	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	117	121	parallel
Strand 3	G	93	100	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	59	61	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	134	first strand
Strand 2	G	145	155	anti-parallel
Strand 3	G	186	195	anti-parallel
Strand 4	G	173	175	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	160	164	first strand
Strand 2	G	205	210	anti-parallel
Strand 3	G	215	220	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	278	279	first strand
Strand 2	c	290	291	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	387	388	first strand
Strand 2	c	391	392	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	278	279	first strand
Strand 2	b	290	291	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	278	279	first strand
Strand 2	a	290	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UL7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UL7