Analysis of interatomic Contacts of Structural Units in PDB entry:
7UM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UM1 entry

There are 5 chains in PDB entry 7UM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 292	ILE 464
d	MET 1	ASN 426
c	MET 1	ASN 484
D	MET 1	LEU 631
C	MET 1	VAL 649

There are105 helices in PDB entry 7UM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	316	Right-handed alpha
Helix 2	AA2	A	319	328	Right-handed alpha
Helix 3	AA3	A	333	344	Right-handed alpha
Helix 4	AA4	A	353	371	Right-handed alpha
Helix 5	AA5	A	375	382	Right-handed alpha
Helix 6	AA6	A	394	404	Right-handed alpha
Helix 7	AA7	A	404	414	Right-handed alpha
Helix 8	AA8	A	414	419	Right-handed alpha
Helix 9	AA9	A	420	425	Right-handed alpha
Helix 10	AB1	A	426	434	Right-handed alpha
Helix 11	AB2	A	450	463	Right-handed alpha
Helix 12	AB3	d	9	14	Right-handed alpha
Helix 13	AB4	d	15	19	Right-handed 310
Helix 14	AB5	d	69	80	Right-handed alpha
Helix 15	AB6	d	82	88	Right-handed alpha
Helix 16	AB7	d	112	120	Right-handed alpha
Helix 17	AB8	d	120	128	Right-handed alpha
Helix 18	AB9	d	134	143	Right-handed alpha
Helix 19	AC1	d	144	148	Right-handed alpha
Helix 20	AC2	d	177	196	Right-handed alpha
Helix 21	AC3	d	200	228	Right-handed alpha
Helix 22	AC4	d	235	240	Right-handed alpha
Helix 23	AC5	d	268	276	Right-handed alpha
Helix 24	AC6	d	276	289	Right-handed alpha
Helix 25	AC7	d	291	305	Right-handed alpha
Helix 26	AC8	d	307	321	Right-handed alpha
Helix 27	AC9	d	363	368	Right-handed alpha
Helix 28	AD1	d	383	391	Right-handed alpha
Helix 29	AD2	d	394	399	Right-handed alpha
Helix 30	AD3	d	414	426	Right-handed alpha
Helix 31	AD4	c	2	12	Right-handed alpha
Helix 32	AD5	c	18	23	Right-handed alpha
Helix 33	AD6	c	23	28	Right-handed alpha
Helix 34	AD7	c	29	40	Right-handed alpha
Helix 35	AD8	c	41	44	Right-handed 310
Helix 36	AD9	c	176	194	Right-handed alpha
Helix 37	AE1	c	204	211	Right-handed alpha
Helix 38	AE2	c	212	218	Right-handed alpha
Helix 39	AE3	c	234	239	Right-handed alpha
Helix 40	AE4	c	239	253	Right-handed alpha
Helix 41	AE5	c	258	263	Right-handed alpha
Helix 42	AE6	c	264	277	Right-handed alpha
Helix 43	AE7	c	279	298	Right-handed alpha
Helix 44	AE8	c	299	306	Right-handed alpha
Helix 45	AE9	c	309	314	Right-handed 310
Helix 46	AF1	c	315	326	Right-handed alpha
Helix 47	AF2	c	326	332	Right-handed alpha
Helix 48	AF3	c	337	339	Right-handed 310
Helix 49	AF4	c	347	349	Right-handed 310
Helix 50	AF5	c	350	366	Right-handed alpha
Helix 51	AF6	c	371	380	Right-handed alpha
Helix 52	AF7	c	386	396	Right-handed alpha
Helix 53	AF8	c	428	436	Right-handed alpha
Helix 54	AF9	c	438	442	Right-handed 310
Helix 55	AG1	D	6	13	Right-handed alpha
Helix 56	AG2	D	15	34	Right-handed alpha
Helix 57	AG3	D	67	78	Right-handed alpha
Helix 58	AG4	D	78	85	Right-handed alpha
Helix 59	AG5	D	89	93	Right-handed 310
Helix 60	AG6	D	98	113	Right-handed alpha
Helix 61	AG7	D	116	140	Right-handed alpha
Helix 62	AG8	D	147	157	Right-handed alpha
Helix 63	AG9	D	157	165	Right-handed alpha
Helix 64	AH1	D	175	197	Right-handed alpha
Helix 65	AH2	D	201	208	Right-handed alpha
Helix 66	AH3	D	212	221	Right-handed alpha
Helix 67	AH4	D	247	271	Right-handed alpha
Helix 68	AH5	D	273	284	Right-handed alpha
Helix 69	AH6	D	308	315	Right-handed alpha
Helix 70	AH7	D	346	350	Right-handed 310
Helix 71	AH8	D	357	362	Right-handed alpha
Helix 72	AH9	D	364	369	Right-handed alpha
Helix 73	AI1	D	372	394	Right-handed alpha
Helix 74	AI2	D	512	525	Right-handed alpha
Helix 75	AI3	D	526	532	Right-handed alpha
Helix 76	AI4	D	533	549	Right-handed alpha
Helix 77	AI5	D	553	565	Right-handed alpha
Helix 78	AI6	D	573	577	Right-handed 310
Helix 79	AI7	D	587	595	Right-handed alpha
Helix 80	AI8	D	597	604	Right-handed alpha
Helix 81	AI9	D	606	613	Right-handed alpha
Helix 82	AJ1	D	625	631	Right-handed alpha
Helix 83	AJ2	C	2	7	Right-handed alpha
Helix 84	AJ3	C	8	13	Right-handed alpha
Helix 85	AJ4	C	20	25	Right-handed 310
Helix 86	AJ5	C	27	31	Right-handed 310
Helix 87	AJ6	C	32	45	Right-handed alpha
Helix 88	AJ7	C	61	69	Right-handed alpha
Helix 89	AJ8	C	126	132	Right-handed alpha
Helix 90	AJ9	C	182	188	Right-handed alpha
Helix 91	AK1	C	239	243	Right-handed 310
Helix 92	AK2	C	275	281	Right-handed alpha
Helix 93	AK3	C	285	311	Right-handed alpha
Helix 94	AK4	C	318	333	Right-handed alpha
Helix 95	AK5	C	381	385	Right-handed 310
Helix 96	AK6	C	413	435	Right-handed alpha
Helix 97	AK7	C	437	453	Right-handed alpha
Helix 98	AK8	C	453	467	Right-handed alpha
Helix 99	AK9	C	468	482	Right-handed alpha
Helix 100	AL1	C	496	507	Right-handed alpha
Helix 101	AL2	C	535	539	Right-handed 310
Helix 102	AL3	C	575	583	Right-handed alpha
Helix 103	AL4	C	587	599	Right-handed alpha
Helix 104	AL5	C	601	614	Right-handed alpha
Helix 105	AL6	C	629	643	Right-handed alpha

There are 21 sheets in PDB entry 7UM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	384	first strand
Strand 2	A	438	440	anti-parallel
Strand 3	A	444	445	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	58	61	first strand
Strand 2	d	152	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	67	68	first strand
Strand 2	d	149	150	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	164	167	first strand
Strand 2	d	172	175	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	543	first strand
Strand 2	d	249	257	anti-parallel
Strand 3	d	375	380	anti-parallel
Strand 4	d	326	331	anti-parallel
Strand 5	d	340	348	anti-parallel
Strand 6	d	264	267	parallel
Strand 7	d	357	360	anti-parallel
Strand 8	d	249	257	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	48	54	first strand
Strand 2	c	77	88	anti-parallel
Strand 3	c	91	102	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	69	70	first strand
Strand 2	C	337	338	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	110	112	first strand
Strand 2	c	115	118	anti-parallel
Strand 3	c	399	400	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	341	344	first strand
Strand 2	c	121	125	anti-parallel
Strand 3	c	415	417	parallel
Strand 4	c	458	460	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	129	131	first strand
Strand 2	c	134	137	anti-parallel
Strand 3	c	144	154	anti-parallel
Strand 4	c	160	168	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	200	203	first strand
Strand 2	c	229	233	anti-parallel
Strand 3	c	219	223	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	59	first strand
Strand 2	D	62	66	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	305	first strand
Strand 2	D	341	344	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	321	first strand
Strand 2	D	327	329	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	486	487	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	143	147	anti-parallel
Strand 3	C	120	125	anti-parallel
Strand 4	C	113	117	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	87	first strand
Strand 2	C	93	99	anti-parallel
Strand 3	C	104	109	anti-parallel
Strand 4	C	316	317	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	367	first strand
Strand 2	C	524	531	anti-parallel
Strand 3	C	160	166	anti-parallel
Strand 4	C	400	402	parallel
Strand 5	C	177	181	anti-parallel
Strand 6	C	375	380	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	200	first strand
Strand 2	C	348	358	anti-parallel
Strand 3	C	264	272	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	233	236	anti-parallel
Strand 3	C	257	258	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	388	first strand
Strand 2	C	396	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UM1