Analysis of interatomic Contacts of Structural Units in PDB entry:
7UMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UMK entry

There are 4 chains in PDB entry 7UMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 422
B
 LYS 43HIS 227
C
 GLN 58LYS 229
R
 U 28 U 36
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7UMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 33Right-handed alpha
Helix 2
AA2
A
47 62Right-handed alpha
Helix 3
AA3
A
65 77Right-handed alpha
Helix 4
AA4
A
127 132Right-handed 310
Helix 5
AA5
A
133 145Right-handed alpha
Helix 6
AA6
A
149 169Right-handed alpha
Helix 7
AA7
A
184 188Right-handed 310
Helix 8
AA8
A
189 205Right-handed alpha
Helix 9
AA9
A
210 221Right-handed 310
Helix 10
AB1
A
227 239Right-handed alpha
Helix 11
AB2
A
241 248Right-handed alpha
Helix 12
AB3
A
253 262Right-handed alpha
Helix 13
AB4
A
294 307Right-handed alpha
Helix 14
AB5
A
323 339Right-handed alpha
Helix 15
AB6
A
374 385Right-handed alpha
Helix 16
AB7
A
390 401Right-handed alpha
Helix 17
AB8
A
411 420Right-handed alpha
Helix 18
AB9
B
81 89Right-handed alpha
Helix 19
AC1
B
101 115Right-handed alpha
Helix 20
AC2
B
119 125Right-handed alpha
Helix 21
AC3
B
189 193Right-handed 310
Helix 22
AC4
B
200 208Right-handed alpha
Helix 23
AC5
C
80 90Right-handed alpha
Helix 24
AC6
C
98 100Right-handed 310
Helix 25
AC7
C
101 115Right-handed alpha
Helix 26
AC8
C
119 125Right-handed alpha
Helix 27
AC9
C
189 193Right-handed 310
Helix 28
AD1
C
200 209Right-handed alpha
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There are 7 sheets in PDB entry 7UMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
13 14anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
109 112parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
93 94anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
130 143anti-parallel
Strand 3
B
60 74anti-parallel
Strand 4
B
167 179anti-parallel
Strand 5
B
156 164anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
221 224anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 143first strand
Strand 2
C
60 74anti-parallel
Strand 3
C
168 179anti-parallel
Strand 4
C
156 163anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
211 212first strand
Strand 2
C
222 224anti-parallel
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